CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g60500

Gene name undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.84 91.9 At5g60500 836171 undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein F:transferase activity, transferring alkyl or aryl (other than methyl) groups;P:unknown;C:unknown;BOFMAP S.X. H.G.
0.93 96.4 At2g03850 814911 late embryogenesis abundant domain-containing protein / LEA domain-containing protein F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:unknown;PBOMFA S.X. H.G.
0.92 96.0 At1g68875 843220 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.91 95.6 At4g14815 827138 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:anchored to membrane;P S.X. H.G.
0.91 95.6 At4g37900 829946 glycine-rich protein F:unknown;P:biological_process unknown;C:cellular_component unknown;BMPOFVA S.X. H.G.
0.90 95.1 At1g74540 843795 CYP98A8 member of CYP98A S.X. H.G.
0.90 95.1 At1g26710 839212 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P S.X. H.G.
0.89 94.6 At5g48210 834874 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.88 94.0 At1g06260 837137 cysteine proteinase, putative F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF S.X. H.G.
0.88 94.0 At1g13140 837871 CYP86C3 member of CYP86C S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
270.6 100.0 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
208.5 100.0 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
203.2 100.0 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
181.9 100.0 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
178.6 100.0 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
174.2 100.0 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
170.5 100.0 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
163.9 99.9 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
160.5 99.9 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
158.5 99.9 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.91 0 1116 At5g60510 836172 undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein F:transferase activity, transferring alkyl or aryl (other than methyl) groups;P:unknown;C:unknown;BOFMAP C.G. S.X.
0.02 3e-2 40 At4g25390 828642 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVA C.G. S.X.
0.03 4e-1 36 At4g11250 826727 AGL52 F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;POF C.G. S.X.
0.02 4e-1 36 At3g11000 820271 - F:unknown;P:unknown;C:endomembrane system;POBFMV C.G. S.X.
0.01 4e-1 36 At2g39260 818511 RNA binding / binding / protein binding F:protein binding, RNA binding, binding;P:translation, RNA metabolic process;C:cellular_component unknown;MOFBPVA C.G. S.X.
0.01 2e+0 34 At4g36360 829788 BGAL3 (beta-galactosidase 3) putative beta-galactosidase (BGAL3 gene) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 6e-1 36 Glycine max GmaAffx.48849.1.S1_at AW781656 - - 8e-1 At5g36960 unknown protein C.G. S.X.
0.03 3e+0 32 Hordeum vulgare AF474982_CDS-3_at AF474982_CDS-3 - - 2e+0 At2g25510 unknown protein C.G. S.X.
0.02 3e+0 34 Oryza sativa OsAffx.23309.1.S1_at - - - 0 C.G. S.X.
0.03 9e+0 32 Populus trichocarpa PtpAffx.69716.1.A1_at CV245724 - - 8e-1 At3g53820 zinc finger (C2H2 type) family protein C.G. S.X.
0.03 1e-1 38 Triticum aestivum TaAffx.29347.1.S1_at CA644832 - - 9e-1 At5g39650 unknown protein C.G. S.X.
0.02 2e+0 32 Vitis vinifera 1606921_at CB979343 - - 1e+0 At2g07340 prefoldin-related KE2 family protein C.G. S.X.
0.03 3e+0 32 Zea mays Zm.2181.1.S1_at BF727788 - - 9e-1 At2g10602 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00034 Polyisoprenoid biosynthesis

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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