Gene omics information

Query gene ID At5g60460
Gene name sec61beta family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5065.3At5g60460836167sec61beta family proteinF:protein transporter activity;P:protein transport;C:plasma membrane;MFPOBS.X.H.G.
0.5065.3At1g70670843404caleosin-related family proteinF:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;PFOS.X.H.G.
0.3338.1At4g01410828166harpin-induced family protein / HIN1 family protein / harpin-responsive family proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PS.X.H.G.
0.3338.1At4g32290829363unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POBS.X.H.G.
0.2522.6At2g05910815143unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
103.899.9E-ATMX-1-raw-cel-1112746095
99.199.9GSM131702ATGE_82_CGSE5634AtGenExpress: Developmental series (siliques and seeds)
93.999.9GSM131706ATGE_84_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
90.499.9GSM131701ATGE_82_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
87.599.9E-ATMX-1-raw-cel-1112746209
85.399.9E-ATMX-1-raw-cel-1112746154
85.099.9GSM131698ATGE_81_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
82.699.9E-ATMX-1-raw-cel-1112746267
82.199.9GSM131697ATGE_81_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
81.199.9GSM131699ATGE_81_CGSE5634AtGenExpress: Developmental series (siliques and seeds)
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.024e-238At4g37330829888CYP81D4member of CYP81DC.G.S.X.
0.012e-136At5g44030834426CESA4 (CELLULOSE SYNTHASE A4)Encodes a cellulose synthase involved in secondary cell wall biosynthesis. Confers resistance towards bacterial and fungal pathogens, independent of salicylic acid, ethylene and jasmonate signaling.C.G.S.X.
0.036e-134At5g10380830902RING1Encodes a RING finger domain protein with E3 ligase activity that is localized to the lipid rafts of the plasma membrane. Expression is increased in response to fungal pathogen. May be involved in regulation of programmed cell death by facilitating degredation of regulation of PDC activators.C.G.S.X.
0.016e-134At5g06600830548UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12)Encodes a ubiquitin-specific protease.C.G.S.X.
0.046e-134At2g23310816863ATRER1C1Encodes AtRER1C1, a Golgi membrane protein involved in returning the molecules that are exported from the endoplasmic reticulum (ER) to the Golgi apparatus back to the ER (a mechanism known as retrieval). There are two Arabidopsis homologues of AtRERC1: AtRER1A and AtRER1B.C.G.S.X.
0.046e-134At1g68220843151unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.304e-1891Glycine maxGma.5350.1.S1_s_atAW351218--6e-18At5g60460sec61beta family proteinC.G.S.X.
0.148e-546Hordeum vulgareContig5466_s_atContig5466--3e-4At5g60460sec61beta family proteinC.G.S.X.
0.165e-342Oryza sativaOs12g0103300AU222596-Protein transport protein SEC61 beta subunit4e-3At5g60460sec61beta family proteinC.G.S.X.
0.271e-1273Populus trichocarpaPtpAffx.18075.1.S1_atCV278430--2e-12At5g60460sec61beta family proteinC.G.S.X.
0.082e-446Triticum aestivumTa.12797.1.S1_atCA652314--4e-4At5g60460sec61beta family proteinC.G.S.X.
0.242e-1373Vitis vinifera1620903_atCF605711hypothetical protein LOC100260422-2e-12At5g60460sec61beta family proteinC.G.S.X.
0.104e-340Zea maysZm.16986.1.S1_atCF632581protein transport protein Sec61 beta subunit-2e-2At5g60460sec61beta family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0015031The directed movement of proteins into, out of, within or between cells.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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