CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g60460

Gene name sec61beta family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.50 65.3 At5g60460 836167 sec61beta family protein F:protein transporter activity;P:protein transport;C:plasma membrane;MFPOB S.X. H.G.
0.50 65.3 At1g70670 843404 caleosin-related family protein F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;PFO S.X. H.G.
0.33 38.1 At4g01410 828166 harpin-induced family protein / HIN1 family protein / harpin-responsive family protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P S.X. H.G.
0.33 38.1 At4g32290 829363 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POB S.X. H.G.
0.25 22.6 At2g05910 815143 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
103.8 99.9 E-ATMX-1-raw-cel-1112746095
99.1 99.9 GSM131702 ATGE_82_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
93.9 99.9 GSM131706 ATGE_84_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
90.4 99.9 GSM131701 ATGE_82_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
87.5 99.9 E-ATMX-1-raw-cel-1112746209
85.3 99.9 E-ATMX-1-raw-cel-1112746154
85.0 99.9 GSM131698 ATGE_81_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
82.6 99.9 E-ATMX-1-raw-cel-1112746267
82.1 99.9 GSM131697 ATGE_81_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
81.1 99.9 GSM131699 ATGE_81_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 4e-2 38 At4g37330 829888 CYP81D4 member of CYP81D C.G. S.X.
0.01 2e-1 36 At5g44030 834426 CESA4 (CELLULOSE SYNTHASE A4) Encodes a cellulose synthase involved in secondary cell wall biosynthesis. Confers resistance towards bacterial and fungal pathogens, independent of salicylic acid, ethylene and jasmonate signaling. C.G. S.X.
0.03 6e-1 34 At5g10380 830902 RING1 Encodes a RING finger domain protein with E3 ligase activity that is localized to the lipid rafts of the plasma membrane. Expression is increased in response to fungal pathogen. May be involved in regulation of programmed cell death by facilitating degredation of regulation of PDC activators. C.G. S.X.
0.01 6e-1 34 At5g06600 830548 UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12) Encodes a ubiquitin-specific protease. C.G. S.X.
0.04 6e-1 34 At2g23310 816863 ATRER1C1 Encodes AtRER1C1, a Golgi membrane protein involved in returning the molecules that are exported from the endoplasmic reticulum (ER) to the Golgi apparatus back to the ER (a mechanism known as retrieval). There are two Arabidopsis homologues of AtRERC1: AtRER1A and AtRER1B. C.G. S.X.
0.04 6e-1 34 At1g68220 843151 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.30 4e-18 91 Glycine max Gma.5350.1.S1_s_at AW351218 - - 6e-18 At5g60460 sec61beta family protein C.G. S.X.
0.14 8e-5 46 Hordeum vulgare Contig5466_s_at Contig5466 - - 3e-4 At5g60460 sec61beta family protein C.G. S.X.
0.16 5e-3 42 Oryza sativa Os12g0103300 AU222596 - Protein transport protein SEC61 beta subunit 4e-3 At5g60460 sec61beta family protein C.G. S.X.
0.27 1e-12 73 Populus trichocarpa PtpAffx.18075.1.S1_at CV278430 - - 2e-12 At5g60460 sec61beta family protein C.G. S.X.
0.08 2e-4 46 Triticum aestivum Ta.12797.1.S1_at CA652314 - - 4e-4 At5g60460 sec61beta family protein C.G. S.X.
0.24 2e-13 73 Vitis vinifera 1620903_at CF605711 hypothetical protein LOC100260422 - 2e-12 At5g60460 sec61beta family protein C.G. S.X.
0.10 4e-3 40 Zea mays Zm.16986.1.S1_at CF632581 protein transport protein Sec61 beta subunit - 2e-2 At5g60460 sec61beta family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0015031 The directed movement of proteins into, out of, within or between cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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