Gene omics information

Query gene ID At5g60340
Gene name maoC-like dehydratase domain-containing protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6277.3At5g60340836156maoC-like dehydratase domain-containing proteinF:oxidoreductase activity, ATP binding;P:metabolic process;C:mitochondrion;BOMFAPS.X.H.G.
0.5166.3At1g06440837156ubiquitin thiolesteraseF:ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:mitochondrion, intracellular;POS.X.H.G.
0.4659.8At1g80880844428pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMFBAS.X.H.G.
0.4457.2At1g12700837825helicase domain-containing protein / pentatricopeptide (PPR) repeat-containing proteinF:helicase activity, nucleic acid binding, ATP binding;P:biological_process unknown;C:unknown;PBOMFAVS.X.H.G.
0.3948.4At3g53360824504pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBS.X.H.G.
0.3643.6At1g12100837762lipid bindingF:lipid binding;P:lipid transport;C:endomembrane system;PS.X.H.G.
0.3439.8At3g20730821621pentatricopeptide (PPR) repeat-containing proteinF:binding;P:biological_process unknown;C:endomembrane system;POMFBS.X.H.G.
0.3439.8At1g74400843781pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMBS.X.H.G.
0.3439.8At3g13682820577LDL2 (LSD1-LIKE2)Encodes a homolog of human Lysine-Specific Demethylase1. Involved in H3K4 methylation of target genes including the flowering loci FLC and FWA.S.X.H.G.
0.3235.7At3g16710820923-F:unknown;P:biological_process unknown;C:cellular_component unknown;POMFBAS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
808.3100.0GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
158.199.9GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
157.099.9GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
147.099.9GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
138.299.9GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
137.999.9GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
137.999.9GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
128.599.9GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
126.899.9GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
117.399.9GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.032e-344At4g00420828061double-stranded RNA-binding domain (DsRBD)-containing proteinF:double-stranded RNA binding, RNA binding;P:biological_process unknown;C:intracellular, chloroplast;PC.G.S.X.
0.011e-138At5g47820834833FRA1 (FRAGILE FIBER 1)encodes a kinesin-like protein with an N-terminal microtubule binding motor domain. Protein is localized to the periphery of the cytoplasm and mutants in the gene exhibit altered orientation of cellulose microfibrils and reduced mechanical strength of fibers.C.G.S.X.
0.011e-138At1g51890841616leucine-rich repeat protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAC.G.S.X.
0.025e-136At4g18060827531clathrin bindingF:clathrin binding;P:unknown;C:unknown;MOFPBC.G.S.X.
0.015e-136At3g62010825374unknown proteinF:unknown;P:unknown;C:cellular_component unknown;MBOPFC.G.S.X.
0.012e+034At5g51490835223pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFOMC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.122e-1067Glycine maxGmaAffx.36854.1.A1_atBI970307--5e-11At5g60340maoC-like dehydratase domain-containing proteinC.G.S.X.
0.031e+034Hordeum vulgareContig6258_s_atContig6258--6e-1At5g60340maoC-like dehydratase domain-containing proteinC.G.S.X.
0.044e-344Oryza sativaOs.32983.2.A1_x_at---0C.G.S.X.
0.111e-861Populus trichocarpaPtp.4080.1.A1_s_atCV239227hypothetical protein-9e-9At5g60340maoC-like dehydratase domain-containing proteinC.G.S.X.
0.032e+034Triticum aestivumTaAffx.83768.1.S1_atCA651516--5e-1At5g60340maoC-like dehydratase domain-containing proteinC.G.S.X.
0.022e+032Vitis vinifera1614807_s_atCF405955--3e-22At1g50010TUA2C.G.S.X.
0.023e+032Zea maysZm.4621.1.A1_atAI737376Hypothetical protein LOC100217024-1e+1At4g36900RAP2.10 (related to AP2 10)C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0008152The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage