CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g60220

Gene name TET4 (TETRASPANIN4)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g60220 836144 TET4 (TETRASPANIN4) Member of TETRASPANIN family S.X. H.G.
0.75 86.9 At5g24510 832522 60s acidic ribosomal protein P1, putative F:structural constituent of ribosome;P:translational elongation;C:cytosolic ribosome, ribosome;MFOPA S.X. H.G.
0.74 86.1 At1g75600 843895 histone H3.2, putative F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MFPO S.X. H.G.
0.65 79.6 At2g23210 816853 UDP-glycosyltransferase/ transferase, transferring glycosyl groups F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;P S.X. H.G.
0.64 78.9 At3g10900 820260 (1-4)-beta-mannan endohydrolase, putative F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFBOA S.X. H.G.
0.64 78.9 At4g20200 827766 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;POF S.X. H.G.
0.64 78.9 At1g16980 838269 ATTPS2 Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active but no trehalose phosphatase (TPP)-like domain. S.X. H.G.
0.63 78.1 At2g20595 816583 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.63 78.1 At1g73560 843690 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P S.X. H.G.
0.62 77.3 At1g48010 841219 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
623.8 100.0 GSM311280 Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
458.3 100.0 GSM311279 Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
325.7 100.0 GSM133304 RIKEN-NAKABAYASHI1B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
253.0 100.0 GSM134304 Penfield_1-6_endosperm-ABA_Rep3_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
238.9 100.0 GSM284394 Arabidopsis GCE3 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
236.7 100.0 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
221.7 100.0 GSM284392 Arabidopsis GCE1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
185.5 100.0 GSM284393 Arabidopsis GCE2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
166.3 100.0 GSM133303 RIKEN-NAKABAYASHI1A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
162.4 99.9 GSM311291 Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.62 6e-53 208 At3g45600 823702 TET3 (TETRASPANIN3) Member of TETRASPANIN family C.G. S.X.
0.02 3e-2 40 At1g79340 844272 AtMC4 (metacaspase 4) F:cysteine-type peptidase activity;P:proteolysis;C:plasma membrane;BOFPAM C.G. S.X.
0.01 5e-1 36 At5g57690 835876 diacylglycerol kinase F:diacylglycerol kinase activity;P:activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway;C:chloroplast;MPOB C.G. S.X.
0.01 5e-1 36 At3g04380 819593 SUVR4 Encodes SUVR4, a nucleolar histone methyltransferase with preference for monomethylated H3K9. One of the four closely related Arabidopsis SUVR proteins that belong to the SU(VAR)3-9 subgroup of SET-domain proteins. Proteins containing the evolutionarily conserved SET domain are involved in regulation of eukaryotic gene expression and chromatin structure through their histone lysine methyltransferase (HMTase) activity. SUVR1, SUVR2 and SUVR4 proteins contain a novel domain at their N-terminus, and a SUVR specific region preceding the SET domain. C.G. S.X.
0.01 2e+0 34 At5g13520 831196 peptidase M1 family protein F:metallopeptidase activity, binding, zinc ion binding;P:proteolysis, leukotriene biosynthetic process;C:cellular_component unknown;BMOFAP C.G. S.X.
0.01 2e+0 34 At5g26310 832700 UGT72E3 UGT72E3 is an UDPG:coniferyl alcohol glucosyltransferase which glucosylates sinapyl- and coniferyl alcohol as well as sinapic acid. The enzyme is thought to be involved in lignin- and phenylpropanoid metabolism. A knockdown mutant line (72E3KD) was obtained using RNAi silencing. No reduction in coniferyl alcohol 4-O-glucoside and sinapyl alcohol 4-O-glucoside was detected in this line compared to wildtype, in contrast with the knockdown line constructed for UGT72E2 displayed a twofold reduction in the these phenylpropanoid 4-O-glucosides. C.G. S.X.
0.01 2e+0 34 At5g66690 836802 UGT72E2 UGT72E2 is an UDPG:coniferyl alcohol glucosyltransferase which glucosylates sinapyl- and coniferyl aldehydes as well as sinapyl- and coniferyl alcohol. The enzyme is thought to be involved in lignin metabolism. A knockdown mutant line (72E2KD) was obtained using RNAi silencing. A twofold reduction in coniferyl alcohol 4-O-glucoside and sinapyl alcohol 4-O-glucoside was detected in this line compared to wildtype. In comparison, both knockout and knockdown lines of UGT72E1 and UGT72E3, respectively, failed to display the same reduction in phenylpropanoid 4-O-glucosides. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.17 3e-9 63 Glycine max GmaAffx.5232.1.S1_at BM309521 - - 2e-9 At5g60220 TET4 (TETRASPANIN4) C.G. S.X.
0.03 1e+1 30 Hordeum vulgare HVSMEb0007H18r2_at HVSMEb0007H18r2 - - 6e+0 At5g60220 TET4 (TETRASPANIN4) C.G. S.X.
0.02 1e+0 36 Oryza sativa Os02g0219700 9630.m01160 - CD9/CD37/CD63 antigen family protein 4e-1 At5g60220 TET4 (TETRASPANIN4) C.G. S.X.
0.20 5e-5 50 Populus trichocarpa Ptp.5453.1.S1_s_at AJ779151 hypothetical protein - 2e-11 At3g45600 TET3 (TETRASPANIN3) C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.26242.1.S1_at CA682956 - - 1e+0 At2g35410 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative C.G. S.X.
0.17 6e-10 63 Vitis vinifera 1616444_at CA817083 hypothetical protein LOC100260311 - 3e-9 At5g60220 TET4 (TETRASPANIN4) C.G. S.X.
0.02 3e+0 32 Zea mays ZmAffx.154.1.A1_at AI668116 - - 3e+0 At5g24655 LSU4 (RESPONSE TO LOW SULFUR 4) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0007568 The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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