Gene omics information

Query gene ID At5g60190
Gene name Ulp1 protease family protein
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g60190836141Ulp1 protease family proteinEncodes a protein that can cleave residues from the C-terminus of RUB1 to prepare it for conjugation to target proteins.S.X.H.G.
0.3643.6At1g62880842589cornichon family proteinF:molecular_function unknown;P:intracellular signaling cascade;C:endomembrane system, membrane;MFPOS.X.H.G.
0.2624.4At5g06950830586AHBP-1BTranscription factor of the B-ZIP family that has high affinity for C-box motifs. Interacts with NPR1 and may regulate PR gene expression. Phosphorylated by a CK2-like protein in vitro. Phosphorylation is enhanced by salicylic acid treatment.S.X.H.G.
0.2115.8At5g14620831315DRM2 (DOMAINS REARRANGED METHYLTRANSFERASE 2)A putative DNA methyltransferase with rearranged catalytic domains; similar to mammalian DNMT3 methyltransferases; contains UBA domains. The 3'-end proximal part of the gene coding region is highly methylated at both adenine and cytosine residues.S.X.H.G.
0.2014.4At3g47630823917-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MFPOS.X.H.G.
0.2014.4At3g43700823478ATBPM6 (BTB-POZ and MATH domain 6)F:protein binding;P:unknown;C:unknown;MPOFVS.X.H.G.
0.1811.4At4g38240829981CGL1 (COMPLEX GLYCAN LESS 1)Encodes N-acetyl glucosaminyl transferase I, the first enzyme in the pathway of complex glycan biosynthesis.S.X.H.G.
0.1811.4At2g33610817927ATSWI3B (SWITCH SUBUNIT 3)Homologous to yeast SWI3 & RSC8, components of the SWI/SNF and RSC chromatin remodeling complexes. Interacts with BSH, AtSWI3A, SWI3C and FCA. Expressed ubiquitously.S.X.H.G.
0.1710.2At3g62130825386epimerase-relatedF:pyridoxal phosphate binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOFPAMS.X.H.G.
0.1710.2At2g32600817820hydroxyproline-rich glycoprotein family proteinF:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:nucleus, intracellular, spliceosome;MPOFBVAS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
131.899.9GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
60.399.8GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
32.599.7GSM133957Fukuda_1-2_0B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
30.899.7GSM133961Fukuda_1-6_4B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.011e+034At1g07910837306RNL (RNA LIGASE)Encodes a tRNA ligase that resembles the yeast Trl1 RNA ligase in structure and function but very different in sequence. Like Trl1, AtRNL consists of two domains — an N-terminal ligase component and a C-terminal 5'-kinase/2',3'-cyclic phosphodiesterase (CPD) component— that can function in tRNA splicing in vivo when expressed as separate polypeptides. Requires a 2'-PO4 end for tRNA splicing in vivo.C.G.S.X.
0.011e+034At1g02890839507AAA-type ATPase family proteinF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:chloroplast;BOMFPAVC.G.S.X.
0.021e+034At1g50980841520F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:membrane;PMC.G.S.X.
0.015e+032At5g60040836126NRPC1Encodes a subunit of RNA polymerase III (aka RNA polymerase C).C.G.S.X.
0.025e+032At5g40940834095FLA20 (PUTATIVE FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 20)F:molecular_function unknown;P:unknown;C:cellular_component unknown;PFOC.G.S.X.
0.025e+032At5g06590830547unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.025e+032At4g15880827269ESD4 (EARLY IN SHORT DAYS 4)EARLY IN SHORT DAYS 4 Arabidopsis mutant shows extreme early flowering and alterations in shoot development. It encodes a SUMO protease, located predominantly at the periphery of the nucleus. Accelerates the transition from vegetative growth to flowering. Probably acts in the same pathway as NUA in affecting flowering time, vegetative and inflorescence development.C.G.S.X.
0.015e+032At4g02480827979AAA-type ATPase family proteinF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:chloroplast;OBMFPAVC.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.032e+034Glycine maxGmaAffx.25734.1.S1_atAW457934--7e-1At5g55855unknown proteinC.G.S.X.
0.023e+032Hordeum vulgareContig23773_atContig23773--1e+0At5g14070ROXY2C.G.S.X.
0.021e+132Oryza sativaOsAffx.19148.1.S1_x_at---0C.G.S.X.
0.037e+032Populus trichocarpaPtpAffx.216271.1.S1_atpmrna30929hypothetical protein-7e-1At2g20100ethylene-responsive family proteinC.G.S.X.
0.033e-136Triticum aestivumTaAffx.108381.1.S1_atCA688993--3e-1At5g60190Ulp1 protease family proteinC.G.S.X.
0.032e+032Vitis vinifera1612446_atCB008047--4e+0At5g44540tapetum-specific protein-relatedC.G.S.X.
0.029e+030Zea maysZm.9695.1.A1_atBM335896--1e+0At5g38310unknown proteinC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0006508The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with the hydrolysis of peptide bonds.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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