Gene omics information

Query gene ID At5g60170
Gene name RNA binding / nucleic acid binding / nucleotide binding / protein binding / zinc ion binding
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4457.2At5g60170836139RNA binding / nucleic acid binding / nucleotide binding / protein binding / zinc ion bindingF:protein binding, RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;OMBFPS.X.H.G.
0.7586.9At5g14720831324protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOFBVAS.X.H.G.
0.5773.8At5g12430831118DNAJ heat shock N-terminal domain-containing proteinF:heat shock protein binding, binding;P:protein folding;C:chloroplast;BMOFPAVS.X.H.G.
0.4457.2At1g79830844322GC5 (golgin candidate 5)This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC5 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (139 aa) portion of the protein. The C-terminal portion of the protein can also specifically interact with two members of the Rab family of GTPases (RabH1b and RabH1c).S.X.H.G.
0.3338.1At2g44710819079RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MOPBFVAS.X.H.G.
0.3338.1At3g58040824973SINAT2 (SEVEN IN ABSENTIA OF ARABIDOPSIS 2)Encodes a RING finger domain containing protein that interacts with AtRAP2.2.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
38.699.8GSM133966Fukuda_1-11_10A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
33.599.7GSM133964Fukuda_1-9_8A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
32.599.7GSM133965Fukuda_1-10_8B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
32.099.7GSM133963Fukuda_1-8_6B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
28.299.7GSM133961Fukuda_1-6_4B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
27.999.7GSM133967Fukuda_1-12_10B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
27.399.7GSM133958Fukuda_1-3_2A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
26.399.7GSM133959Fukuda_1-4_2B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
25.699.7GSM133962Fukuda_1-7_6A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
24.699.6GSM133960Fukuda_1-5_4A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.530807At3g45630823705RNA recognition motif (RRM)-containing proteinF:protein binding, RNA binding, zinc ion binding, nucleotide binding, nucleic acid binding;P:unknown;C:unknown;OBMFPVC.G.S.X.
0.145e-28127At2g28540817402nucleic acid binding / nucleotide binding / protein binding / zinc ion bindingF:protein binding, nucleotide binding, zinc ion binding, nucleic acid binding;P:unknown;C:unknown;OMFPBC.G.S.X.
0.014e-138At5g445785008300unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PC.G.S.X.
0.012e+036At4g02030828155-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVC.G.S.X.
0.012e+036At3g06760819861-F:unknown;P:response to water deprivation;C:unknown;PMC.G.S.X.
0.012e+036At3g12203820399scpl17 (serine carboxypeptidase-like 17)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOBC.G.S.X.
0.012e+036At2g26650817206AKT1 (ARABIDOPSIS K TRANSPORTER 1)Shaker-like inward rectifying potassium channel predominantly expressed in predominantly in root hairs and root endodermis.C.G.S.X.
0.016e+034At5g58140835926PHOT2 (PHOTOTROPIN 2)Membrane-bound protein serine/threonine kinase that functions as blue light photoreceptor in redundancy with PHO1. Involved in stomatal opening, chloroplast movement and phototropism. Mediates blue light-induced growth enhancements. PHOT1 and PHOT2 mediate blue light-dependent activation of the plasma membrane H+-ATPase in guard cell protoplasts. PHOT2 possesses two LOV (LOV1 and LOV2, for light-oxygen-voltage-sensing) domains involved in FMN-binding and a C-terminus forming a serine/threonine kinase domain. LOV2 acts as an inhibitor of phototropin kinase in the dark, and light cancels the inhibition through cysteine-FMN adduct formation. LOV1 in contrast acts as an attenuator of photoactivation. Localized to the Golgi apparatus under the induction of blue light.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.112e-28129Glycine maxGmaAffx.21196.1.S1_atAW567776--2e-29At5g60170RNA binding / nucleic acid binding / nucleotide binding / protein binding / zinc ion bindingC.G.S.X.
0.013e+034Hordeum vulgareContig11791_atContig11791--4e+0At5g47090unknown proteinC.G.S.X.
0.051e-554Oryza sativaOs12g0102400AK103750.1-RNA-binding region RNP-1 (RNA recognition motif)domain containing protein6e-16At3g45630RNA recognition motif (RRM)-containing proteinC.G.S.X.
0.273e-76287Populus trichocarpaPtpAffx.204987.1.S1_atpmrna9878--6e-77At5g60170RNA binding / nucleic acid binding / nucleotide binding / protein binding / zinc ion bindingC.G.S.X.
0.012e+036Triticum aestivumTaAffx.36713.1.A1_atBJ318089--3e+0At2g26040Bet v I allergen family proteinC.G.S.X.
0.011e-138Vitis vinifera1616174_atCF516019--6e-2At5g48350nucleic acid bindingC.G.S.X.
0.016e-136Zea maysZmAffx.1201.1.A1_atBE128817--8e-1At2g18970unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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