CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g60150

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g60150 836137 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFPAV S.X. H.G.
0.86 93.1 At3g56100 824776 MRLK (MERISTEMATIC RECEPTOR-LIKE KINASE) Protein kinase expressed in meristematic cells. Phosphorylates AGL24. S.X. H.G.
0.40 50.8 At1g05440 837045 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFV S.X. H.G.
0.40 50.8 At3g57860 824955 UVI4-LIKE (UV-B-INSENSITIVE 4-LIKE) Plant specific-protein of unknown function, shares 62% homology with UVI4 at aa level. S.X. H.G.
0.35 41.6 At3g10310 820193 ATP binding / microtubule motor F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOFP S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
266.0 100.0 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
204.9 100.0 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
196.8 100.0 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
165.1 100.0 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
164.5 100.0 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
159.7 99.9 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
133.5 99.9 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
132.6 99.9 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
132.1 99.9 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
120.3 99.9 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 3e-2 42 At1g52620 841694 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBA C.G. S.X.
0.01 3e-2 42 At1g10720 837615 BSD domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFVB C.G. S.X.
0.01 1e-1 40 At4g18540 827586 unknown protein F:unknown;P:biological_process unknown;C:unknown;FPBM C.G. S.X.
0.01 1e-1 40 At1g28260 839720 - F:unknown;P:biological_process unknown;C:cellular_component unknown;MFPO C.G. S.X.
0.01 5e-1 38 At5g61710 836293 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P C.G. S.X.
0.01 5e-1 38 At5g11430 831014 zinc ion binding F:zinc ion binding;P:transcription;C:nucleus;MFOPB C.G. S.X.
0.01 5e-1 38 At5g44540 834481 tapetum-specific protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.01 5e-1 38 At4g18180 827543 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 1e-2 44 Glycine max PsAffx.CL658Contig1_at PsAffx.CL658Contig1 - - 2e+1 At4g30097 unknown protein C.G. S.X.
0.01 4e-3 44 Hordeum vulgare Contig25984_at Contig25984 - - 9e-1 At4g24380 unknown protein C.G. S.X.
0.01 2e-1 40 Oryza sativa OsAffx.30103.3.S1_at - - - 0 C.G. S.X.
0.01 2e-4 50 Populus trichocarpa PtpAffx.209380.1.S1_at pmrna18575 hypothetical protein - 4e+0 At5g52020 AP2 domain-containing protein C.G. S.X.
0.01 3e-2 42 Triticum aestivum Ta.4764.1.S1_s_at BJ225880 - - 7e-3 At5g11930 glutaredoxin family protein C.G. S.X.
0.03 6e-10 65 Vitis vinifera 1607414_at CF511773 hypothetical protein LOC100255365 - 1e+0 At1g02330 - C.G. S.X.
0.01 2e-1 38 Zea mays Zm.7010.2.A1_at AY106286.1 - - 1e-5 At1g56110 NOP56 (Arabidopsis homolog of nucleolar protein Nop56) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage