Gene omics information

Query gene ID At5g59990
Gene name -
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g59990836121-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMS.X.H.G.
0.5065.3At2g27990817343BLH8 (BEL1-LIKE HOMEODOMAIN 8)Encodes a BEL1-like homeobox gene that functions together with PNY in meristem maintenance by regulating the allocation process during vegetative and reproductive development. Both gene products are required for the competence of the SAM to respond properly to floral inductive signals.S.X.H.G.
0.3338.1At1g49830841406ethylene-responsive protein -relatedF:transcription regulator activity;P:regulation of transcription;C:nucleus;PS.X.H.G.
0.000.0At5g06250830512transcription factorF:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PS.X.H.G.
0.000.0At3g12750820457ZIP1 (ZINC TRANSPORTER 1 PRECURSOR)A member of Zrt- and Irt-related protein (ZIP) family. transcript is induced in response to zinc deficiency in the root.S.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
545.9100.0GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
141.999.9GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
112.799.9GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
111.299.9E-MEXP-1474-raw-cel-1593932705
105.499.9E-MEXP-1474-raw-cel-1593932673
88.299.9GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
82.199.9E-MEXP-1474-raw-cel-1593932609
81.499.9GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
79.799.9GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
78.499.9GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.016e-342At5g55300835623TOP1ALPHA (DNA TOPOISOMERASE I ALPHA)Encodes a type-I DNA topoisomerase I. Disruptions in this gene affect phyllotaxis and plant architecture suggesting that the gene plays a critical role in the maintenance of a regular pattern of organ initiation. Isolated as a protein oxidized during seed germination; proteomics approach revealed differences in de novo synthesis levels of this protein in condition with vs. without salicylic acid in the period from 0 to 40 hrs. following seed imbibition.C.G.S.X.
0.032e-240At5g601426241172DNA bindingF:DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;OMPFBVC.G.S.X.
0.022e-240At4g25940828700epsin N-terminal homology (ENTH) domain-containing proteinF:phospholipid binding, clathrin binding, binding, phosphatidylinositol binding;P:clathrin coat assembly;C:clathrin coat;MOFPVBAC.G.S.X.
0.032e-240At4g03165828052unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.082e-240At2g33350817898-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMFBAC.G.S.X.
0.022e-240At2g03760814903STEncodes a brassinosteroid sulfotransferase. In vitro experiements show that this enzyme has a preference for 24-epibrassinosteroids, particularly 24-epicathasterone, but does not act on castasterone and brassinolide. It is differentially expressed during development, being more abundant in young seedlings and actively growing cell cultures. Expression is induced in response to salicylic acid and methyl jasmonate and bacterial pathogens.C.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.041e-138Glycine maxHgAffx.17714.1.S1_atCB278676--9e-1At1g12530unknown proteinC.G.S.X.
0.037e-134Hordeum vulgareContig3720_atContig3720--7e-21At1g16300GAPCP-2C.G.S.X.
0.042e-138Oryza sativaOsAffx.29956.1.S1_at---0C.G.S.X.
0.131e-757Populus trichocarpaPtpAffx.216659.1.S1_atpmrna31591hypothetical protein-9e-8At5g59990-C.G.S.X.
0.039e-238Triticum aestivumTaAffx.79078.1.S1_s_atCA722977--1e+1At5g16390CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1)C.G.S.X.
0.033e-238Vitis vinifera1620384_s_atCA809883similar to Os04g0533900-8e-20At5g23760heavy-metal-associated domain-containing proteinC.G.S.X.
0.034e-238Zea maysZm.2297.1.A1_atAW352507hypothetical protein LOC100192643-4e-1At3g06750hydroxyproline-rich glycoprotein family proteinC.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage