CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g59990

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g59990 836121 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM S.X. H.G.
0.50 65.3 At2g27990 817343 BLH8 (BEL1-LIKE HOMEODOMAIN 8) Encodes a BEL1-like homeobox gene that functions together with PNY in meristem maintenance by regulating the allocation process during vegetative and reproductive development. Both gene products are required for the competence of the SAM to respond properly to floral inductive signals. S.X. H.G.
0.33 38.1 At1g49830 841406 ethylene-responsive protein -related F:transcription regulator activity;P:regulation of transcription;C:nucleus;P S.X. H.G.
0.00 0.0 At5g06250 830512 transcription factor F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;P S.X. H.G.
0.00 0.0 At3g12750 820457 ZIP1 (ZINC TRANSPORTER 1 PRECURSOR) A member of Zrt- and Irt-related protein (ZIP) family. transcript is induced in response to zinc deficiency in the root. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
545.9 100.0 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
141.9 99.9 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
112.7 99.9 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
111.2 99.9 E-MEXP-1474-raw-cel-1593932705
105.4 99.9 E-MEXP-1474-raw-cel-1593932673
88.2 99.9 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
82.1 99.9 E-MEXP-1474-raw-cel-1593932609
81.4 99.9 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
79.7 99.9 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
78.4 99.9 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 6e-3 42 At5g55300 835623 TOP1ALPHA (DNA TOPOISOMERASE I ALPHA) Encodes a type-I DNA topoisomerase I. Disruptions in this gene affect phyllotaxis and plant architecture suggesting that the gene plays a critical role in the maintenance of a regular pattern of organ initiation. Isolated as a protein oxidized during seed germination; proteomics approach revealed differences in de novo synthesis levels of this protein in condition with vs. without salicylic acid in the period from 0 to 40 hrs. following seed imbibition. C.G. S.X.
0.03 2e-2 40 At5g60142 6241172 DNA binding F:DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;OMPFBV C.G. S.X.
0.02 2e-2 40 At4g25940 828700 epsin N-terminal homology (ENTH) domain-containing protein F:phospholipid binding, clathrin binding, binding, phosphatidylinositol binding;P:clathrin coat assembly;C:clathrin coat;MOFPVBA C.G. S.X.
0.03 2e-2 40 At4g03165 828052 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.08 2e-2 40 At2g33350 817898 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMFBA C.G. S.X.
0.02 2e-2 40 At2g03760 814903 ST Encodes a brassinosteroid sulfotransferase. In vitro experiements show that this enzyme has a preference for 24-epibrassinosteroids, particularly 24-epicathasterone, but does not act on castasterone and brassinolide. It is differentially expressed during development, being more abundant in young seedlings and actively growing cell cultures. Expression is induced in response to salicylic acid and methyl jasmonate and bacterial pathogens. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e-1 38 Glycine max HgAffx.17714.1.S1_at CB278676 - - 9e-1 At1g12530 unknown protein C.G. S.X.
0.03 7e-1 34 Hordeum vulgare Contig3720_at Contig3720 - - 7e-21 At1g16300 GAPCP-2 C.G. S.X.
0.04 2e-1 38 Oryza sativa OsAffx.29956.1.S1_at - - - 0 C.G. S.X.
0.13 1e-7 57 Populus trichocarpa PtpAffx.216659.1.S1_at pmrna31591 hypothetical protein - 9e-8 At5g59990 - C.G. S.X.
0.03 9e-2 38 Triticum aestivum TaAffx.79078.1.S1_s_at CA722977 - - 1e+1 At5g16390 CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1) C.G. S.X.
0.03 3e-2 38 Vitis vinifera 1620384_s_at CA809883 similar to Os04g0533900 - 8e-20 At5g23760 heavy-metal-associated domain-containing protein C.G. S.X.
0.03 4e-2 38 Zea mays Zm.2297.1.A1_at AW352507 hypothetical protein LOC100192643 - 4e-1 At3g06750 hydroxyproline-rich glycoprotein family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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