CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g59930

Gene name DC1 domain-containing protein / UV-B light-insensitive protein, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.50 65.3 At5g59930 836115 DC1 domain-containing protein / UV-B light-insensitive protein, putative F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;POMF S.X. H.G.
0.82 90.9 At3g45530 823694 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMO S.X. H.G.
0.74 86.1 At5g43040 834319 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;PMO S.X. H.G.
0.58 73.8 At2g27010 817243 CYP705A9 member of CYP705A S.X. H.G.
0.58 73.8 At3g07000 819885 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMO S.X. H.G.
0.52 67.4 At1g16160 838185 WAKL5 (wall associated kinase-like 5) WAK-like kinase S.X. H.G.
0.46 59.8 At1g33610 840255 protein binding F:protein binding;P:signal transduction;C:endomembrane system;PMOBFAV S.X. H.G.
0.46 59.8 At1g55390 841986 DC1 domain-containing protein F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;BOMPFVA S.X. H.G.
0.45 58.3 At3g46720 823825 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF S.X. H.G.
0.45 58.3 At4g11550 826759 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
377.1 100.0 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
373.5 100.0 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
183.6 100.0 GSM184520 Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
151.0 99.9 GSM184519 Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
123.6 99.9 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
110.8 99.9 GSM184480 Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
107.0 99.9 GSM184483 Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
104.7 99.9 GSM184493 Epidermis&Cortex root cells 2hr continuous KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
99.8 99.9 GSM184477 Lateral Root Cap root cells 2hr KCl control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
94.1 99.9 GSM184479 Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.50 4e-83 309 At5g59940 836116 DC1 domain-containing protein / UV-B light-insensitive protein, putative F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMOFB C.G. S.X.
0.38 8e-23 109 At5g59920 836114 ULI3 Isolated in a screen for UV-B insensitive mutants using a hypocotyl growth inhibition assay. Mutants are defective in a number of UV-B responses. C.G. S.X.
0.33 8e-23 109 At4g01350 828015 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:response to chitin;C:unknown;POMF C.G. S.X.
0.13 2e-11 71 At3g45840 823727 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PM C.G. S.X.
0.11 3e-10 67 At5g22355 832296 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMOF C.G. S.X.
0.05 4e-9 63 At3g48400 823998 DC1 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO C.G. S.X.
0.05 7e-8 59 At3g27500 822372 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMOF C.G. S.X.
0.02 3e-7 57 At5g29624 833061 DC1 domain-containing protein F:zinc ion binding;P:intracellular signaling cascade;C:intracellular;PMOF C.G. S.X.
0.04 4e-6 54 At2g43220 818923 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;PMOB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 1e+0 36 Glycine max PsAffx.C1091000001_at PsAffx.C1091000001 - - 2e-1 At2g30820 unknown protein C.G. S.X.
0.01 2e+0 34 Hordeum vulgare Contig12264_s_at Contig12264 - - 2e-8 At3g59890 dihydrodipicolinate reductase family protein C.G. S.X.
0.01 5e-1 38 Oryza sativa Os.14565.1.S1_at - - - 0 C.G. S.X.
0.01 1e+0 36 Populus trichocarpa Ptp.6384.3.S1_at CK092709 hypothetical protein - 9e-11 At1g46480 WOX4 (WUSCHEL RELATED HOMEOBOX 4) C.G. S.X.
0.01 1e+0 36 Triticum aestivum Ta.15537.1.S1_at CA485614 - - 1e-16 At3g09820 ADK1 (adenosine kinase 1) C.G. S.X.
0.01 1e+0 34 Vitis vinifera 1619734_at CB971047 - - 4e+0 At5g62290 nucleotide-sensitive chloride conductance regulator (ICln) family protein C.G. S.X.
0.01 4e-1 36 Zea mays Zm.247.1.A1_at AJ012281.1 adenosine kinase - 3e-68 At5g03300 ADK2 (ADENOSINE KINASE 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0007242 A series of reactions within the cell that occur as a result of a single trigger reaction or compound.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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