CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g59880

Gene name ADF3 (ACTIN DEPOLYMERIZING FACTOR 3)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.67 81.6 At5g59880 836110 ADF3 (ACTIN DEPOLYMERIZING FACTOR 3) Encodes actin depolymerizing factor 3 (ADF3). S.X. H.G.
0.80 89.8 At4g29350 829056 PFN2 (PROFILIN 2) Encodes profilin2, a low-molecular weight, actin monomer-binding protein that regulates the organization of actin cytoskeleton. Expressed in vegetative organs. The first intron of PRF2 enhances gene expression. S.X. H.G.
0.46 59.8 At4g11150 826716 TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1) Encodes a vacuolar H+-ATPase subunit E isoform 1 which is required for Golgi organization and vacuole function in embryogenesis. S.X. H.G.
0.44 57.2 At4g22310 828326 unknown protein F:unknown;P:biological_process unknown;C:mitochondrion;MFPO S.X. H.G.
0.32 35.7 At3g08610 820008 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, respiratory chain complex I;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.4 98.8 GSM226547 Slice5JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
5.7 98.4 E-MEXP-1474-raw-cel-1593932513
5.6 98.4 GSM226538 L8SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
5.4 98.3 GSM216981 Vector_shoots_4h_GA4+DEX_repl2 GSE8741 DELLA protein direct targets in Arabidopsis
5.1 98.2 E-MEXP-1474-raw-cel-1593932481
5.1 98.2 GSM226536 L6SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
5.1 98.2 GSM226549 Slice7JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
4.8 98.0 E-MEXP-1474-raw-cel-1593932705
4.7 98.0 GSM216973 Vector_shoots_4h_GA4+DEX_repl1 GSE8741 DELLA protein direct targets in Arabidopsis
4.3 97.7 GSM184835 Arabidopsis, root, longitudinal zone 3, standard conditions, replicate 5 GSE7639 Expression analysis of root developmental zones after treatment with salt
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.73 2e-51 202 At5g59890 836111 ADF4 (ACTIN DEPOLYMERIZING FACTOR 4) actin depolymerizing factor 4 (ADF4) mRNA, complete cds C.G. S.X.
0.70 2e-38 159 At3g46010 823744 ADF1 (ACTIN DEPOLYMERIZING FACTOR 1) Actin-depolymerizing factor (ADF) and cofilin define a family of actin-binding proteins essential for the rapid turnover of filamentous actin in vivo. C.G. S.X.
0.73 5e-30 131 At3g46000 823743 ADF2 (ACTIN DEPOLYMERIZING FACTOR 2) Encodes depolymerizing factor 2. C.G. S.X.
0.38 6e-11 67 At3g45990 823742 actin-depolymerizing factor, putative F:actin binding;P:biological_process unknown;C:intracellular;MPOF C.G. S.X.
0.14 3e-9 61 At1g01750 839281 ADF11 (ACTIN DEPOLYMERIZING FACTOR 11) F:actin binding;P:biological_process unknown;C:intracellular;MPOFB C.G. S.X.
0.12 9e-7 54 At5g52360 835312 ADF10 (ACTIN DEPOLYMERIZING FACTOR 10) F:actin binding;P:biological_process unknown;C:intracellular;MPOF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.35 1e-28 127 Glycine max GmaAffx.88908.1.A1_x_at CK605775 - - 2e-28 At5g59880 ADF3 (ACTIN DEPOLYMERIZING FACTOR 3) C.G. S.X.
0.14 7e-15 79 Hordeum vulgare HZ54E21r_s_at HZ54E21r - - 6e-17 At3g46010 ADF1 (ACTIN DEPOLYMERIZING FACTOR 1) C.G. S.X.
0.14 7e-12 71 Oryza sativa Os04g0555700 AK069329.1 - Actin-depolymerizing factor (ADF) 2e-18 At4g25590 ADF7 (actin depolymerizing factor 7) C.G. S.X.
0.34 2e-27 123 Populus trichocarpa Ptp.1543.1.S1_at CK089216 actin depolymerizing factor 6 - 2e-30 At3g46010 ADF1 (ACTIN DEPOLYMERIZING FACTOR 1) C.G. S.X.
0.21 6e-8 57 Triticum aestivum Ta.28622.1.A1_at BJ248711 - - 7e-8 At5g59880 ADF3 (ACTIN DEPOLYMERIZING FACTOR 3) C.G. S.X.
0.25 1e-15 81 Vitis vinifera 1621969_s_at CB349073 hypothetical protein LOC100263646 - 3e-45 At5g59890 ADF4 (ACTIN DEPOLYMERIZING FACTOR 4) C.G. S.X.
0.15 1e-13 75 Zea mays Zm.10502.1.S1_at CO521816 actin-depolymerizing factor - 3e-17 At4g25590 ADF7 (actin depolymerizing factor 7) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0046686 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus.
X GO:0006979 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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