CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g59760

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g59760 836097 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM S.X. H.G.
0.48 62.5 At2g36560 818229 DNA-binding protein-related F:unknown;P:unknown;C:unknown;OMPFBV S.X. H.G.
0.47 61.2 At1g51910 841618 protein kinase family protein F:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.43 55.3 At2g37780 818355 DC1 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOB S.X. H.G.
0.41 52.4 At4g22440 828339 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.38 46.7 At5g23180 832382 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.38 46.7 At1g36620 3767020 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.36 43.6 At1g18200 838399 AtRABA6b (Arabidopsis Rab GTPase homolog A6b) F:protein binding, GTP binding, GTPase activity;P:intracellular protein transport, signal transduction, nucleocytoplasmic transport, protein transport, small GTPase mediated signal transduction;C:intracellular;MOFPBAV S.X. H.G.
0.36 43.6 At1g35610 840457 DC1 domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:unknown;POM S.X. H.G.
0.35 41.6 At3g45990 823742 actin-depolymerizing factor, putative F:actin binding;P:biological_process unknown;C:intracellular;MPOF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
346.9 100.0 GSM176876 AWP_AL_Txed_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
332.4 100.0 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
213.0 100.0 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
212.6 100.0 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
146.4 99.9 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
127.3 99.9 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
119.2 99.9 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
115.3 99.9 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
107.6 99.9 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
106.5 99.9 GSM184497 Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 2e-2 40 At5g06930 830584 - F:unknown;P:unknown;C:chloroplast;OMBFPVA C.G. S.X.
0.02 2e-2 40 At4g20070 827752 ATAAH (Arabidopsis thaliana Allantoate Amidohydrolase) The gene encoding Arabidopsis thaliana Allantoate Amidohydrolase (AtAAH)which catalyzes the allantoate deiminase reaction (EC 3.5.3.9)is expressed in all parts of the plant being consistent with a function in purine turnover in Arabidopsis. C.G. S.X.
0.01 2e-2 40 At4g34100 829556 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:unknown;C:chloroplast;MPOFV C.G. S.X.
0.01 9e-2 38 At5g55490 835642 GEX1 (GAMETE EXPRESSED PROTEIN 1) Encodes a transmembrane domain containing protein that is expressed in pollen germ cells. C.G. S.X.
0.02 9e-2 38 At5g46870 834731 RNA recognition motif (RRM)-containing protein F:oxidoreductase activity, nucleotide binding, nucleic acid binding;P:oxidation reduction;C:unknown;PFOBMV C.G. S.X.
0.02 9e-2 38 At4g35080 829660 high-affinity nickel-transport family protein F:nickel ion transmembrane transporter activity, metal ion binding;P:nickel ion transport, metal ion transport;C:integral to membrane, chloroplast;OBPMA C.G. S.X.
0.02 9e-2 38 At4g30090 829132 emb1353 (embryo defective 1353) F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:endomembrane system;MOPBFA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e-1 36 Glycine max GmaAffx.85912.1.S1_at BF069484 - - 6e-2 At4g15248 zinc ion binding C.G. S.X.
0.03 7e-1 34 Hordeum vulgare Contig24290_at Contig24290 - - 3e-4 At3g50550 unknown protein C.G. S.X.
0.04 2e-1 38 Oryza sativa Os02g0282700 9630.m01710 - - 2e-3 At3g57950 unknown protein C.G. S.X.
0.03 3e-2 40 Populus trichocarpa PtpAffx.104546.2.S1_s_at BU809217 potassium efflux antiporter - 2e-8 At2g19600 ATKEA4 C.G. S.X.
0.04 4e-1 36 Triticum aestivum TaAffx.9313.1.S1_at CA603357 - - 1e-3 At4g08330 unknown protein C.G. S.X.
0.03 1e-1 36 Vitis vinifera 1614473_at CB007016 - - 3e-3 At4g26290 unknown protein C.G. S.X.
0.03 6e-1 34 Zea mays Zm.2031.2.A1_a_at BM072808 csu1120 protein /// metallothionein-like protein type 2 - 3e-4 At3g50550 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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