CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g59700

Gene name protein kinase, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.56 73.0 At5g59700 836091 protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA S.X. H.G.
0.33 38.1 At1g24030 839015 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVA S.X. H.G.
0.33 38.1 At1g70500 843386 polygalacturonase, putative / pectinase, putative F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA S.X. H.G.
0.29 30.3 At1g75520 843888 SRS5 (SHI-RELATED SEQUENCE 5) A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. S.X. H.G.
0.20 14.4 At4g29230 829044 anac075 (Arabidopsis NAC domain containing protein 75) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:unknown;PMOFBV S.X. H.G.
0.19 12.7 At5g56370 835738 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
793.0 100.0 GSM133966 Fukuda_1-11_10A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
608.4 100.0 GSM133967 Fukuda_1-12_10B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
603.0 100.0 GSM133964 Fukuda_1-9_8A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
523.9 100.0 GSM133965 Fukuda_1-10_8B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
483.9 100.0 GSM133962 Fukuda_1-7_6A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
479.4 100.0 GSM133963 Fukuda_1-8_6B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
199.1 100.0 GSM133960 Fukuda_1-5_4A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
142.3 99.9 GSM133961 Fukuda_1-6_4B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
63.7 99.8 GSM67086 Arabidopsis_Stigma02 GSE3056 Arabidopsis Pollination Study
58.7 99.8 GSM67087 Arabidopsis_Stigma03 GSE3056 Arabidopsis Pollination Study
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.63 0 722 At3g46290 823774 protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA C.G. S.X.
0.13 5e-31 137 At2g39360 818521 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA C.G. S.X.
0.07 7e-24 113 At1g30570 839937 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA C.G. S.X.
0.05 2e-18 95 At5g24010 832466 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA C.G. S.X.
0.08 2e-17 91 At3g04690 819627 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.12 2e-15 85 At5g54380 835526 THE1 (THESEUS1) F:protein kinase activity, kinase activity;P:protein amino acid autophosphorylation;C:plasma membrane;MPOBFVA C.G. S.X.
0.13 2e-15 85 At5g61350 836256 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.06 4e-13 77 At5g28680 832975 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.06 6e-9 63 At3g51550 824318 FER (FERONIA) Encodes a synergid-expressed, plasma-membrane localized receptor-like kinase that accumulates asymetrically in the synergid membrnane at the filiform apparatus and mediates male-female gametophyte interactions during pollen tube reception. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.18 4e-32 141 Glycine max GmaAffx.74603.1.S1_at AI899767 - - 3e-36 At3g46290 protein kinase, putative C.G. S.X.
0.10 7e-10 65 Hordeum vulgare Contig10499_at Contig10499 - - 7e-10 At5g59700 protein kinase, putative C.G. S.X.
0.10 2e-7 59 Oryza sativa Os06g0334300 AK065468.1 - Receptor-like protein kinase 8e-18 At3g46290 protein kinase, putative C.G. S.X.
0.30 8e-52 206 Populus trichocarpa PtpAffx.204985.1.S1_at pmrna9874 hypothetical protein - 6e-52 At5g59700 protein kinase, putative C.G. S.X.
0.05 8e-2 40 Triticum aestivum Ta.9766.1.S1_at CA732357 - - 3e-10 At3g46290 protein kinase, putative C.G. S.X.
0.13 8e-27 121 Vitis vinifera 1607531_at CA809116 hypothetical protein LOC100251868 - 1e-23 At3g46290 protein kinase, putative C.G. S.X.
0.04 4e-11 69 Zea mays Zm.13630.1.S1_at AY107387.1 hypothetical protein LOC100274007 - 4e-70 At3g51550 FER (FERONIA) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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