CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g59690

Gene name histone H4

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g59690 836090 histone H4 F:DNA binding;P:nucleosome assembly;C:thylakoid;MOPFV S.X. H.G.
0.89 94.6 At3g20670 821614 HTA13 Encodes HTA13, a histone H2A protein. S.X. H.G.
0.75 86.9 At1g09200 837440 histone H3 F:DNA binding;P:nucleosome assembly;C:nucleus, chloroplast, nucleosome;MFPO S.X. H.G.
0.67 81.6 At5g59870 836109 HTA6 Encodes HTA6, a histone H2A protein. S.X. H.G.
0.57 73.8 At1g07790 837293 HTB1 Encodes a histone 2B (H2B) protein. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
19.9 99.6 GSM226534 L4SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
18.2 99.5 E-MEXP-1797-raw-cel-1669768039
13.9 99.4 E-MEXP-1797-raw-cel-1669768084
13.3 99.4 E-MEXP-1797-raw-cel-1669768012
12.0 99.3 E-MEXP-1797-raw-cel-1669767994
12.0 99.3 GSM284385 Arabidopsis GEP6 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
11.5 99.3 GSM284384 Arabidopsis GEP5 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
11.1 99.2 E-ATMX-31-raw-cel-1516947882
11.0 99.2 E-MEXP-1797-raw-cel-1669768066
10.9 99.2 GSM226543 Slice1JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.97 2e-155 547 At5g59970 836119 histone H4 F:DNA binding;P:nucleosome assembly;C:vacuole;MOPFV C.G. S.X.
0.86 4e-82 303 At3g45930 823736 histone H4 F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MOPFV C.G. S.X.
0.86 3e-80 297 At3g46320 823777 histone H4 F:DNA binding;P:chromosome organization, nucleosome assembly;C:nucleus, nucleosome;MOPFV C.G. S.X.
0.84 4e-79 293 At1g07820 837297 histone H4 F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MOPFV C.G. S.X.
0.84 1e-76 286 At1g07660 837279 histone H4 F:DNA binding;P:nucleosome assembly;C:plasma membrane, chloroplast;MOPFV C.G. S.X.
0.73 3e-46 184 At3g53730 824540 histone H4 F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MOPFV C.G. S.X.
0.77 3e-30 131 At2g28740 817423 HIS4 histone 4 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.60 6e-45 180 Glycine max Gma.1254.1.S1_at CF921991 - - 7e-45 At5g59690 histone H4 C.G. S.X.
0.51 9e-23 105 Hordeum vulgare Contig20_at Contig20 - - 3e-22 At5g59690 histone H4 C.G. S.X.
0.48 6e-24 111 Oryza sativa Os10g0539500 AK119699.1 - Histone H4 6e-24 At5g59690 histone H4 C.G. S.X.
0.56 7e-26 117 Populus trichocarpa PtpAffx.104205.1.A1_at CV277856 - - 1e-25 At5g59690 histone H4 C.G. S.X.
0.51 4e-30 131 Triticum aestivum Ta.25145.1.S1_s_at CA621024 - - 6e-30 At5g59690 histone H4 C.G. S.X.
0.59 3e-43 173 Vitis vinifera 1613076_at CB970842 - - 2e-42 At5g59690 histone H4 C.G. S.X.
0.40 9e-29 125 Zea mays Zm.6721.6.A1_at CK371147 Histone H4 - 5e-28 At5g59690 histone H4 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006334 The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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