Gene omics information

Query gene ID At5g59510
Gene name RTFL5 (ROTUNDIFOLIA LIKE 5)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4050.8At5g59510836070RTFL5 (ROTUNDIFOLIA LIKE 5)F:molecular_function unknown;P:shoot development;C:cellular_component unknown;PMFOBS.X.H.G.
0.3133.8At4g24160828516hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:unknown;C:unknown;BOMFPAS.X.H.G.
0.3133.8At5g25930832662leucine-rich repeat family protein / protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane, membrane;MPOBFVAS.X.H.G.
0.2726.2At1g62300842527WRKY6transcription factor WRKY6 (WRKY6)S.X.H.G.
0.2624.4At5g07870830680transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFOS.X.H.G.
0.2014.4At2g25460817084-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.2014.4At3g44190823541pyridine nucleotide-disulphide oxidoreductase family proteinF:electron carrier activity, oxidoreductase activity, FAD binding;P:unknown;C:unknown;BOFAMPS.X.H.G.
0.146.8At3g50900824254unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.114.1At5g65300836655unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PS.X.H.G.
0.092.8At2g29480817497ATGSTU2 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 2)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
562.4100.0E-MEXP-1443-raw-cel-1581869863
241.9100.0GSM133989Birnbaum_1-22_gl2-1_Rep1_ATH1GSE5749A gene expression map of the Arabidopsis root
239.2100.0GSM133968Birnbaum_1-19_LRC-1_Rep1_ATH1GSE5749A gene expression map of the Arabidopsis root
182.0100.0E-MEXP-1443-raw-cel-1581869921
159.199.9GSM133969Birnbaum_1-20_LRC-2_Rep2_ATH1GSE5749A gene expression map of the Arabidopsis root
103.699.9GSM133970Birnbaum_1-21_LRC-3_Rep3_ATH1GSE5749A gene expression map of the Arabidopsis root
83.699.9GSM184913Arabidopsis, root cells, cortex, 140 mM NaCl, replicate 1GSE7641Expression analysis of root cell-types after treatment with salt
75.999.9GSM133993Birnbaum_1-26_J0571-2_Rep2_ATH1GSE5749A gene expression map of the Arabidopsis root
73.699.9GSM133971Birnbaum_1-1_src5-1_Rep1_ATH1GSE5749A gene expression map of the Arabidopsis root
72.999.9GSM131585ATGE_34_AGSE5632AtGenExpress: Developmental series (flowers and pollen)
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.326e-1477At3g466135008070RTFL4 (ROTUNDIFOLIA LIKE 4)Encodes a small is a member of an angiosperm specific gene family.C.G.S.X.
0.023e-342At2g22620816793lyaseF:lyase activity;P:carbohydrate metabolic process;C:unknown;PFBOC.G.S.X.
0.033e-342At2g26930817234ATCDPMEK (4-(CYTIDINE 5'-PHOSPHO)-2-C-METHYL-D-ERITHRITOL KINASE)Encodes a 4-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase.C.G.S.X.
0.063e-342At2g29125817461RTFL2 (ROTUNDIFOLIA LIKE 2)F:molecular_function unknown;P:shoot development;C:chloroplast;OMFBPVAC.G.S.X.
0.051e-240At3g13480820550unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POC.G.S.X.
0.041e-240At2g23755816907unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPC.G.S.X.
0.031e-240At1g12490837806F-box family protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POC.G.S.X.
0.045e-238At4g262885008166-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBVC.G.S.X.
0.015e-238At4g36550829807binding / ubiquitin-protein ligaseF:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:ubiquitin ligase complex;POMFBVC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.043e-136Glycine maxPsAffx.C122000035_atPsAffx.C122000035--2e-1At5g27370unknown proteinC.G.S.X.
0.054e-134Hordeum vulgareHF21N04r_atHF21N04r--2e+0At4g19150ankyrin repeat family proteinC.G.S.X.
0.041e-138Oryza sativaOs03g0365200AK099802.1-Peptidase C48, SUMO/Sentrin/Ubl1 family protein3e-2At2g43110unknown proteinC.G.S.X.
0.155e-342Populus trichocarpaPtpAffx.15213.1.S1_atBU825516hypothetical protein-2e-17At2g29125RTFL2 (ROTUNDIFOLIA LIKE 2)C.G.S.X.
0.042e-136Triticum aestivumTaAffx.52234.1.S1_atCA710869--3e+0At2g38310unknown proteinC.G.S.X.
0.052e-134Vitis vinifera1619607_s_atCF202338.1hypothetical protein LOC100242775-7e-3At4g11020unknown proteinC.G.S.X.
0.051e+032Zea maysZmAffx.1083.1.A1_atAI974922--1e+0At1g59830PP2A-1C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0048367The process whose specific outcome is the progression of the shoot over time, from its formation to the mature structure.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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