Gene omics information

Query gene ID At5g59320
Gene name LTP3 (LIPID TRANSFER PROTEIN 3)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4659.8At5g59320836051LTP3 (LIPID TRANSFER PROTEIN 3)Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.S.X.H.G.
0.7586.9At5g59310836050LTP4 (LIPID TRANSFER PROTEIN 4)Encodes a member of the lipid transfer protein family. Proteins of this family are generally small (~9 kD), basic, expressed abundantly and contain eight Cys residues. The proteins can bind fatty acids and acylCoA esters and can transfer several different phospholipids. They are localized to the cell wall. The mRNA is present in flowers and siliques, and is strongly up-regulated by abscisic acid. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.S.X.H.G.
0.4050.8At1g57750842150CYP96A15 (CYTOCHROME P450 96 A1)Encodes a CYP96A15, midchain alkane hydroxylase, involved in cuticular wax biosynthesis.S.X.H.G.
0.4050.8At4g21650828252subtilase family proteinF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:plant-type cell wall;BPOFAMS.X.H.G.
0.2522.6At5g25390832611SHN2 (shine2)encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.S.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
44.299.8GSM128787Somerville_1-10_stem-GH7_Rep1_ATH1GSE5533Tissue Type Arrays of Columbia-0
37.399.7GSM128788Somerville_1-11_stem-GH8_Rep2_ATH1GSE5533Tissue Type Arrays of Columbia-0
36.599.7GSM133816Yang_1-1_young-pod_Rep1_ATH1GSE5736To identify changes in gene expression during silique senescence in Arabidopsis thaliana
36.299.7GSM10480lec1-1 Cotyledon Stage Seed 2GSE1051Seed development in LEAFY COTYLEDON1 mutants
36.099.7GSM142601BD001_ATH1_A5-DAVIE-T14GSE6149Targets of the mci genes.
33.699.7GSM47043rdr1-1 33GSE2473Small RNA biogenesis mutants
33.699.7GSM128785Somerville_1-8_stem-GC7_Rep1_ATH1GSE5533Tissue Type Arrays of Columbia-0
33.499.7GSM128786Somerville_1-9_stem-GC8_Rep2_ATH1GSE5533Tissue Type Arrays of Columbia-0
33.399.7GSM47047rdr2-1 37GSE2473Small RNA biogenesis mutants
32.299.7E-ATMX-30-raw-cel-1513696830
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.841e-57222At5g59310836050LTP4 (LIPID TRANSFER PROTEIN 4)Encodes a member of the lipid transfer protein family. Proteins of this family are generally small (~9 kD), basic, expressed abundantly and contain eight Cys residues. The proteins can bind fatty acids and acylCoA esters and can transfer several different phospholipids. They are localized to the cell wall. The mRNA is present in flowers and siliques, and is strongly up-regulated by abscisic acid. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.C.G.S.X.
0.057e-134At3g51600824323LTP5 (Lipid transfer protein 5)Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.C.G.S.X.
0.023e+032At5g15650831419RGP2 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 2)Reversibly Glycosylated Polypeptide-2C.G.S.X.
0.023e+032At5g38130833793transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:unknown;C:unknown;PFC.G.S.X.
0.013e+032At5g51350835209leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;PMOBFAVC.G.S.X.
0.023e+032At5g49070834966KCS21 (3-KETOACYL-COA SYNTHASE 21)Encodes KCS21, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).C.G.S.X.
0.013e+032At5g39500833946pattern formation protein, putativeF:ARF guanyl-nucleotide exchange factor activity;P:regulation of ARF protein signal transduction;C:intracellular;MFOPBC.G.S.X.
0.023e+032At3g02230821233RGP1 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1)reversibly glycosylated polypeptide possibly involved in plant cell wall synthesisC.G.S.X.
0.033e+032At2g38640818446unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.044e+032Glycine maxGmaAffx.46163.1.S1_atCA783495--2e-7At4g39070zinc finger (B-box type) family proteinC.G.S.X.
0.045e+030Hordeum vulgareHW04H17u_s_atHW04H17u--2e-1At5g63740zinc finger protein-relatedC.G.S.X.
0.045e+032Oryza sativaOsAffx.29924.1.S1_at---0C.G.S.X.
0.049e-134Populus trichocarpaPtpAffx.5388.2.A1_atCV236598hypothetical protein-1e+0At5g36659-C.G.S.X.
0.042e-136Triticum aestivumTa.7422.3.S1_a_atCA593775--6e-5At5g20520WAV2 (WAVY GROWTH 2)C.G.S.X.
0.043e+030Vitis vinifera1622313_atCF405525hypothetical protein LOC100248915-9e-4At4g34240ALDH3I1 (ALDEHYDE DEHYDROGENASE 3|1)C.G.S.X.
0.034e+030Zea maysZm.9183.1.A1_atBM331963--7e-2At1g77810galactosyltransferase family proteinC.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009414A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water.
XGO:0009737A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage