Gene omics information

Query gene ID At5g59170
Gene name proline-rich family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5368.6At5g59170836035proline-rich family proteinF:unknown;P:unknown;C:endomembrane system;MPOBFVAS.X.H.G.
0.9697.3At4g271408288222S seed storage protein 1 / 2S albumin storage protein / NWMU1-2S albumin 1F:lipid binding, nutrient reservoir activity;P:lipid transport;C:endomembrane system;PMOS.X.H.G.
0.9697.3At4g271508288232S seed storage protein 2 / 2S albumin storage protein / NWMU2-2S albumin 2F:lipid binding, nutrient reservoir activity;P:lipid transport;C:endomembrane system;POS.X.H.G.
0.9195.6At4g271708288252S seed storage protein 4 / 2S albumin storage protein / NWMU2-2S albumin 4F:lipid binding, nutrient reservoir activity;P:lipid transport;C:endomembrane system;POS.X.H.G.
0.8592.4At1g03880839383CRU2 (CRUCIFERIN 2)Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.S.X.H.G.
0.7788.0At1g03890839379cupin family proteinF:nutrient reservoir activity;P:biological_process unknown;C:endomembrane system;PBMOS.X.H.G.
0.7788.0At4g27160828824AT2S3F:lipid binding, nutrient reservoir activity;P:lipid transport;C:endomembrane system;POS.X.H.G.
0.7687.4At5g07190830610ATS3 (ARABIDOPSIS THALIANA SEED GENE 3)Gene is expressed preferentially in the embryo and encodes a unique protein of unknown function.S.X.H.G.
0.7385.5At4g26740828781ATS1 (ARABIDOPSIS THALIANA SEED GENE 1)Gene is expressed preferentially in the embryo, has similarity to a rice ABA-responsive gene, EFA27.S.X.H.G.
0.7184.2At4g25140828617OLEO1 (OLEOSIN 1)Encodes oleosin1, a protein found in oil bodies, involved in seed lipid accumulation. Suppression of OLEO1 (and OLEO2) resulted in an aberrant phenotype of embryo cells that contain unusually large oilbodies that are not normally observed in seeds. Changes in the size of oilbodies caused disruption of storage organelles, altering accumulation of lipids and proteins and causing delay in germination. Functions in freezing tolerance of seeds.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
331.3100.0GSM131708ATGE_84_DGSE5634AtGenExpress: Developmental series (siliques and seeds)
266.5100.0GSM131707ATGE_84_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
252.6100.0GSM131704ATGE_83_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
246.2100.0GSM131703ATGE_83_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
244.8100.0GSM131705ATGE_83_CGSE5634AtGenExpress: Developmental series (siliques and seeds)
238.6100.0GSM10483lec1-1 Post-Mature Green Seed 1GSE1051Seed development in LEAFY COTYLEDON1 mutants
214.0100.0GSM131701ATGE_82_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
198.5100.0GSM10456WT Post-Mature Green Seed 2GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
190.1100.0GSM131702ATGE_82_CGSE5634AtGenExpress: Developmental series (siliques and seeds)
189.8100.0E-ATMX-1-raw-cel-1112746267
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.024e-136At4g08400826398proline-rich extensin-like family proteinF:structural constituent of cell wall;P:plant-type cell wall organization;C:cellular_component unknown;MFPOBVAC.G.S.X.
0.014e-136At4g08410826400proline-rich extensin-like family proteinF:structural constituent of cell wall;P:plant-type cell wall organization;C:unknown;MFPOBVAC.G.S.X.
0.014e-136At3g48080823963lipase class 3 family protein / disease resistance protein-relatedF:lipase activity, triacylglycerol lipase activity, signal transducer activity;P:lipid metabolic process;C:cellular_component unknown;POBC.G.S.X.
0.024e-136At1g80320844372oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;POBFMC.G.S.X.
0.032e+034At5g458753771443SCRL27 (SCR-Like 27)Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).C.G.S.X.
0.012e+034At5g01680831698ATCHX26member of Putative Na+/H+ antiporter familyC.G.S.X.
0.022e+034At4g21190827867emb1417 (embryo defective 1417)F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:unknown;POMBC.G.S.X.
0.012e+034At4g21130827861EMB2271 (EMBRYO DEFECTIVE 2271)similar to man and yeast U3-55K genes, involved in processing of pre-ribosomal RNA.C.G.S.X.
0.017e+032At5g21105832235L-ascorbate oxidase/ copper ion binding / oxidoreductaseF:oxidoreductase activity, L-ascorbate oxidase activity, copper ion binding;P:oxidation reduction;C:cell wall;BFPMOAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.022e+034Glycine maxGmaAffx.56983.1.S1_atBG045428--6e-3At1g28320DEG15C.G.S.X.
0.028e-134Hordeum vulgareContig10303_s_atContig10303--3e-10At5g35220EGY1 (ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 1)C.G.S.X.
0.033e+034Oryza sativaOsAffx.28843.1.S1_x_at---0C.G.S.X.
0.032e+034Populus trichocarpaPtpAffx.142388.1.S1_atBU875071hypothetical protein-8e-42At4g13720inosine triphosphate pyrophosphatase, putative / HAM1 family proteinC.G.S.X.
0.037e+032Triticum aestivumTaAffx.108124.1.S1_atCA691387--3e+0At5g59170proline-rich family proteinC.G.S.X.
0.035e-134Vitis vinifera1611400_atCF510785hypothetical protein LOC100266087-1e+0At5g30520unknown proteinC.G.S.X.
0.021e+130Zea maysZmAffx.534.1.A1_atAI711770ubiquitin-conjugating enzyme E2 E3-3e+0At3g50651unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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