CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g59130

Gene name subtilase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g59130 836031 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM S.X. H.G.
0.45 58.3 At1g10760 837619 SEX1 (STARCH EXCESS 1) Encodes an α-glucan, water dikinase required for starch degradation. Involved in cold-induced freezing tolerance. Mutations that eliminate the GWD protein or affect the dikinase domain of the enzyme dramatically reduce both the amount of phosphate in the amylopectin and the rate of starch degradation. Mature leaves of these mutants accumulate amounts of starch up to seven times greater than those in wild-type leaves. NMR analysis of the mutants, suggests that the gene is specifically involved in the phosphorylation of the glucosyl residues of starch at the C6 position. S.X. H.G.
0.41 52.4 At2g32290 817789 BAM6 (BETA-AMYLASE 6) F:cation binding, beta-amylase activity, catalytic activity;P:cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process;C:chloroplast;PBO S.X. H.G.
0.40 50.8 At3g26290 822232 CYP71B26 putative cytochrome P450 S.X. H.G.
0.38 46.7 At3g18500 821380 - F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFOB S.X. H.G.
0.38 46.7 At3g46970 823850 PHS2 (ALPHA-GLUCAN PHOSPHORYLASE 2) Encodes a cytosolic alpha-glucan phosphorylase. In vitro, the enzyme has a preference for branched polysaccharides, such as glycogen. S.X. H.G.
0.37 45.0 At2g40840 818682 DPE2 (DISPROPORTIONATING ENZYME 2) Encodes a cytosolic protein with transglucosidase and amylomaltase activity. It is an essential component of the pathway from starch to sucrose and cellular metabolism in leaves at night. The protein binds to heteroglycans and utilizes glucose, mannose and xylose as acceptors. Fucose and galactose can also act as acceptors but less efficiently than the previous three. It was also was also recently reported to act on maltodextrins. On the other hand, arabinose and fructose were not efficiently used. Its role probably includes metabolizing maltose exported from the chloroplast. Studies using maltose extracted from the double mutant be2-1 be3-2 showed that this enzyme is preferentially active of β-maltose. S.X. H.G.
0.35 41.6 At4g18390 827568 TCP family transcription factor, putative F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;POMFB S.X. H.G.
0.34 39.8 At1g03310 839531 isoamylase, putative / starch debranching enzyme, putative Encodes a protein with strong similarity to isoamylase (EC:3.2.1.68) however lacks critical residues known to be important for activity. Appears to co localize with ISA1 in the chloroplast isoamylase complex. Mutations in this gene cause the loss of detectable isoamylase activity and the disruption of normal starch structure. It has been postulated that AtISA2 interacts with AtISA1 to form the Iso1 complex. S.X. H.G.
0.32 35.7 At3g52180 824383 SEX4 (STARCH-EXCESS 4) Encodes a plant-specific protein phosphatase that contains a protein tyrosine phosphatase (PTP) catalytic domain and a kinase interaction sequence (KIS) domain. This protein interacts with the plant SnRK AKIN11. Binds starch. Localized in the chloroplast. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
65.6 99.8 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
63.6 99.8 GSM299329 pkl Mutant Germinating Seeds With Solvent Treatment Only Set 3 of 6 GSE11852 Effect of uniconazole on wt and pkl mutant germinating seeds
63.5 99.8 GSM299330 pkl Mutant Germinating Seeds With Solvent Treatment Only Set 4 of 6 GSE11852 Effect of uniconazole on wt and pkl mutant germinating seeds
62.5 99.8 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
61.6 99.8 GSM299332 pkl Mutant Germinating Seeds With Solvent Treatment Only Set 6 of 6 GSE11852 Effect of uniconazole on wt and pkl mutant germinating seeds
61.5 99.8 GSM299327 pkl Mutant Germinating Seeds With Solvent Treatment Only Set 1 of 6 GSE11852 Effect of uniconazole on wt and pkl mutant germinating seeds
60.3 99.8 GSM299331 pkl Mutant Germinating Seeds With Solvent Treatment Only Set 5 of 6 GSE11852 Effect of uniconazole on wt and pkl mutant germinating seeds
53.3 99.8 GSM299328 pkl Mutant Germinating Seeds With Solvent Treatment Only Set 2 of 6 GSE11852 Effect of uniconazole on wt and pkl mutant germinating seeds
46.9 99.8 GSM299321 Wild Type Germinating Seeds With Solvent Treatment Only Set 1 of 6 GSE11852 Effect of uniconazole on wt and pkl mutant germinating seeds
44.6 99.8 GSM269815 T6 leaf-drought-rep1 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.64 2e-128 460 At5g58840 836001 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM C.G. S.X.
0.59 2e-119 430 At5g58830 836000 identical protein binding / serine-type endopeptidase F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM C.G. S.X.
0.63 6e-61 236 At5g59120 836030 ATSBT4.13 (ARABIDOPSIS THALIANA SUBTILASE 4.13) F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM C.G. S.X.
0.60 4e-59 230 At5g58820 835999 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM C.G. S.X.
0.39 2e-48 194 At5g59100 836027 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM C.G. S.X.
0.22 1e-43 178 At5g59110 836029 subtilisin-like serine protease-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO C.G. S.X.
0.57 2e-42 174 At5g59090 836026 ATSBT4.12 F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast, nucleus, cytoplasm;BPOFAM C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 3e-2 42 Glycine max Gma.3460.1.S1_at BQ629044 subtilisin-like protease C1 - 7e-5 At5g59190 subtilase family protein C.G. S.X.
0.01 5e-1 36 Hordeum vulgare Contig20124_at Contig20124 - - 2e+0 At5g38800 AtbZIP43 (Arabidopsis thaliana basic leucine-zipper 43) C.G. S.X.
0.02 9e+0 34 Oryza sativa OsAffx.18866.1.S1_at - - - 0 C.G. S.X.
0.09 4e-7 57 Populus trichocarpa PtpAffx.204943.1.S1_at pmrna9782 hypothetical protein - 3e-7 At5g59130 subtilase family protein C.G. S.X.
0.01 3e-1 38 Triticum aestivum TaAffx.7272.1.S1_at CA663383 - - 2e-2 At2g40220 ABI4 (ABA INSENSITIVE 4) C.G. S.X.
0.01 3e-1 36 Vitis vinifera 1620896_at BQ798046 hypothetical protein LOC100253196 - 1e+0 At3g62000 O-methyltransferase family 3 protein C.G. S.X.
0.01 2e+0 34 Zea mays Zm.8929.1.A1_a_at AW352606 hypothetical protein LOC100277218 - 5e+0 At4g02489 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006508 The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with the hydrolysis of peptide bonds.
L GO:0043086 Any process that stops or reduces the activity of an enzyme.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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