Gene omics information

Query gene ID At5g59000
Gene name zinc finger (C3HC4-type RING finger) family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g59000836017zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOFPVBAS.X.H.G.
0.2930.3At2g01760814707ARR14 (ARABIDOPSIS RESPONSE REGULATOR 14)member of Response Regulator: B- TypeS.X.H.G.
0.051.1At5g55210835614unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PS.X.H.G.
0.030.6At2g24220816956ATPUP5Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.S.X.H.G.
0.020.4At1g74520843793ATHVA22APart of the AtHVA22a family. Protein expression is ABA- and stress-inducible.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
30.999.7GSM142643MC002_ATH1_A7.3-dubos-wLhGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
30.899.7GSM242962Mock day 7 (day7E2)GSE9605Target genes of AGAMOUS during early flower development in Arabidopsis
30.599.7GSM242961Mock day 7 (day7E1)GSE9605Target genes of AGAMOUS during early flower development in Arabidopsis
26.199.7GSM133778Lindsey_1-2_globular-apical_Rep2_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
25.299.6GSM131677ATGE_50_BGSE5633AtGenExpress: Developmental series (shoots and stems)
24.999.6GSM142644MC002_ATH1_A8.1-dubos-aihGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
24.599.6GSM142642MC002_ATH1_A7.2-dubos-wLhGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
23.299.6GSM242963Steroid day 7 (day7D1)GSE9605Target genes of AGAMOUS during early flower development in Arabidopsis
22.899.6GSM131665ATGE_46_BGSE5633AtGenExpress: Developmental series (shoots and stems)
22.699.6GSM131670ATGE_48_AGSE5633AtGenExpress: Developmental series (shoots and stems)
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.106e-1271At2g37950818372zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFC.G.S.X.
0.052e-859At5g05830830468zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOC.G.S.X.
0.019e-238At1g05960837106bindingF:binding;P:biological_process unknown;C:plasma membrane;MFPBOC.G.S.X.
0.023e-136At4g28700828988AMT1F:high affinity secondary active ammonium transmembrane transporter activity, ammonium transmembrane transporter activity;P:transport;C:plasma membrane, membrane;OBMFPAC.G.S.X.
0.011e+034At3g11920820365glutaredoxin-relatedF:electron carrier activity, protein disulfide oxidoreductase activity;P:intracellular signaling cascade, cell redox homeostasis;C:cellular_component unknown;BOMPFC.G.S.X.
0.011e+034At2g01970814728endomembrane protein 70, putativeF:unknown;P:transport;C:integral to membrane, Golgi apparatus, plasma membrane, plant-type cell wall;MPOFC.G.S.X.
0.021e+034At1g15970838167methyladenine glycosylase family proteinF:DNA-3-methyladenine glycosylase I activity, catalytic activity;P:DNA repair, base-excision repair;C:cellular_component unknown;BOPMAFC.G.S.X.
0.025e+032At5g17900831658-F:molecular_function unknown;P:biological_process unknown;C:extracellular region;MOFBPVAC.G.S.X.
0.025e+032At5g39865833983glutaredoxin family proteinF:electron carrier activity, protein disulfide oxidoreductase activity;P:N-terminal protein myristoylation, cell redox homeostasis;C:plasma membrane;POMBFC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.042e+034Glycine maxGma.13614.1.A1_atCD402000--4e-1At5g59000zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.031e+130Hordeum vulgareHVSMEg0011B20f_atHVSMEg0011B20f--8e+0At4g20690unknown proteinC.G.S.X.
0.033e+034Oryza sativaOs.42422.1.S1_at---0C.G.S.X.
0.091e-448Populus trichocarpaPtpAffx.95765.1.A1_atCV233661hypothetical protein-4e-5At5g59000zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.064e-136Triticum aestivumTa.7875.1.A1_atBQ160837--3e-7At5g05830zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.042e+032Vitis vinifera1620206_atCF515519--1e+0At5g27150NHX1 (NA+/H+ EXCHANGER)C.G.S.X.
0.039e+030Zea maysZm.5229.1.A1_atCO519750ATP-dependent transporter ycf16-4e-24At3g10670ATNAP7C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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