CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g58940

Gene name CRCK1 (CALMODULIN-BINDING RECEPTOR-LIKE CYTOPLASMIC KINASE 1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.24 20.7 At5g58940 836011 CRCK1 (CALMODULIN-BINDING RECEPTOR-LIKE CYTOPLASMIC KINASE 1) Arabidopsis thaliana calmodulin-binding receptor-like kinase mRNA S.X. H.G.
0.57 73.8 At5g45000 834531 transmembrane receptor F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PBO S.X. H.G.
0.44 57.2 At4g14610 3770075 - F:unknown;P:unknown;C:unknown S.X. H.G.
0.12 4.9 At5g53110 835391 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.06 1.4 At3g14470 820670 disease resistance protein (NBS-LRR class), putative F:protein binding, ATP binding;P:defense response, apoptosis;C:endomembrane system;PMBOFA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
120.3 99.9 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
104.8 99.9 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
97.4 99.9 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
94.2 99.9 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
93.8 99.9 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
90.7 99.9 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
89.4 99.9 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
83.8 99.9 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
80.0 99.9 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
70.7 99.9 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 2e-4 48 At1g56145 842067 leucine-rich repeat family protein / protein kinase family protein F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVA C.G. S.X.
0.04 1e-2 42 At4g00330 828125 CRCK2 high overall homology to CRCK1 C.G. S.X.
0.01 4e-2 40 At3g15220 820753 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:spindle, cytoplasm;MPOBFVA C.G. S.X.
0.01 7e-1 36 At5g50840 835156 - F:unknown;P:biological_process unknown;C:unknown;MOBFPAV C.G. S.X.
0.01 7e-1 36 At5g17910 831659 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;MOBFPVA C.G. S.X.
0.02 7e-1 36 At4g27840 828897 - F:molecular_function unknown;P:transport;C:endomembrane system;P C.G. S.X.
0.01 7e-1 36 At4g16563 827356 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:plant-type cell wall;PMFO C.G. S.X.
0.02 7e-1 36 At4g23630 828463 BTI1 (VIRB2-INTERACTING PROTEIN 1) F:unknown;P:biological_process unknown;C:endoplasmic reticulum, plasma membrane, vacuole;MPOF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 4e-3 44 Glycine max Gma.10515.1.S1_at BM528701 - - 4e-5 At2g11520 CRCK3 C.G. S.X.
0.02 5e+0 32 Hordeum vulgare HA10M12u_s_at HA10M12u - - 3e+0 At1g76705 calmodulin binding C.G. S.X.
0.02 3e-1 38 Oryza sativa Os01g0852100 CB664209 - Protein kinase domain containing protein 2e-1 At5g03320 protein kinase, putative C.G. S.X.
0.05 2e-2 42 Populus trichocarpa PtpAffx.122960.1.A1_at CK097505 hypothetical protein - 3e-5 At4g00330 CRCK2 C.G. S.X.
0.02 7e-1 36 Triticum aestivum TaAffx.41728.1.S1_at BE415135 - - 2e+0 At1g28080 unknown protein C.G. S.X.
0.03 1e-2 40 Vitis vinifera 1611471_at CF214980 hypothetical protein LOC100243943 - 6e-12 At1g48480 RKL1 C.G. S.X.
0.02 5e+0 32 Zea mays Zm.7964.1.A1_at AY106297.1 - - 5e-1 At5g48375 TGG3 (THIOGLUCOSIDE GLUCOSIDASE 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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