CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g58870

Gene name ftsh9 (FtsH protease 9)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.43 55.3 At5g58870 836004 ftsh9 (FtsH protease 9) encodes an FtsH protease that is localized to the chloroplast S.X. H.G.
0.67 81.6 At5g64840 836607 ATGCN5 (A. THALIANA GENERAL CONTROL NON-REPRESSIBLE 5) member of GCN subfamily S.X. H.G.
0.60 75.7 At5g67030 836838 ABA1 (ABA DEFICIENT 1) Encodes a single copy zeaxanthin epoxidase gene that functions in first step of the biosynthesis of the abiotic stress hormone abscisic acid (ABA). Mutants in this gene are unable to express female sterility in response to beta-aminobutyric acid, as wild type plants do. S.X. H.G.
0.55 70.6 At1g66330 842950 senescence-associated family protein F:unknown;P:senescence;C:unknown;PB S.X. H.G.
0.40 50.8 At3g01060 821278 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;BOFP S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
13.9 99.4 GSM131256 AtGen_6-0612_Control-Shoots-24.0h_Rep2 GSE5620 AtGenExpress: Stress Treatments (Control plants)
12.4 99.3 GSM131468 AtGen_6-9612_Heatstress(3h)+21hrecovery-Shoots-24.0h_Rep2 GSE5628 AtGenExpress: Stress Treatments (Heat stress)
11.5 99.3 GSM131255 AtGen_6-0611_Control-Shoots-24.0h_Rep1 GSE5620 AtGenExpress: Stress Treatments (Control plants)
11.0 99.2 GSM94010 Wild type third repeat GSE4113 Arabidopsis plants with altered levels of alternative oxidase
11.0 99.2 GSM131467 AtGen_6-9611_Heatstress(3h)+21hrecovery-Shoots-24.0h_Rep1 GSE5628 AtGenExpress: Stress Treatments (Heat stress)
10.8 99.2 GSM131379 AtGen_6-5611_Genotoxicstress-Shoots-24.0h_Rep1 GSE5625 AtGenExpress: Stress Treatments (Genotoxic stress)
10.4 99.2 GSM131263 AtGen_6-1211_Cold(4°C)-Shoots-1.0h_Rep1 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
10.3 99.2 GSM133826 Walters_A-05-Kruger-WH2_REP2 GSE5737 Carbohydrate- and redox-regulation of gene expression in a TPT mutant
9.8 99.1 GSM244451 Arabidopsis AtMYB30-ox_90-105 min_ Xanthomonas inoculated_biological rep1_exp1 GSE9674 Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
9.7 99.1 GSM133827 Walters_A-06-Kruger-WH3_REP3 GSE5737 Carbohydrate- and redox-regulation of gene expression in a TPT mutant
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.77 0 1711 At3g47060 823859 ftsh7 (FtsH protease 7) encodes an FtsH protease that is localized to the chloroplast C.G. S.X.
0.05 3e-4 48 At2g30950 817646 VAR2 (VARIEGATED 2) Metalloprotease that functions in thylakoid membrane biogenesis. Involved in the repair of PSII following damaged incurred during photoinhibition. Forms a complex with VAR1. Mutants show a variegated phenotype, which decreases during development. Transcript and protein levels increase with light intensity. C.G. S.X.
0.04 8e-2 40 At1g06430 837154 FTSH8 encodes a FtsH protease that is localized to the chloroplast C.G. S.X.
0.02 8e-2 40 At1g80350 844375 ERH3 (ECTOPIC ROOT HAIR 3) encodes a p60 katanin protein that is expressed throughout the plant. Required for the specification of cell fates from early in development (in the meristem) through differentiation and for normal postmitotic organization of cortical microtubules into transverse arrays in root epidermis cells. Mutants display cytoskeletal defects. C.G. S.X.
0.01 3e-1 38 At5g08250 830721 cytochrome P450 family protein F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:cellular_component unknown;MPFBOAV C.G. S.X.
0.01 3e-1 38 At3g56930 824860 zinc finger (DHHC type) family protein F:zinc ion binding;P:biological_process unknown;C:plasma membrane;MOFPV C.G. S.X.
0.02 3e-1 38 At2g26140 817154 ftsh4 (FtsH protease 4) encodes an FtsH protease that is localized to the mitochondrion C.G. S.X.
0.01 3e-1 38 At2g29080 817456 ftsh3 (FtsH protease 3) encodes an FtsH protease that is localized to the mitochondrion C.G. S.X.
0.01 3e-1 38 At1g02030 839285 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MPOFB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.29 3e-48 194 Glycine max Gma.7653.1.S1_at CD411885 - - 2e-78 At3g47060 ftsh7 (FtsH protease 7) C.G. S.X.
0.15 4e-14 79 Hordeum vulgare Contig12225_at Contig12225 - - 4e-14 At5g58870 ftsh9 (FtsH protease 9) C.G. S.X.
0.24 1e-45 186 Oryza sativa Os02g0649700 AK069509.1 - Peptidase M41, FtsH extracellular domaincontaining protein 6e-34 At3g47060 ftsh7 (FtsH protease 7) C.G. S.X.
0.53 2e-71 272 Populus trichocarpa PtpAffx.249.372.S1_at BU893069 hypothetical protein - 1e-71 At5g58870 ftsh9 (FtsH protease 9) C.G. S.X.
0.23 4e-22 107 Triticum aestivum Ta.27582.1.S1_at BG907365 - - 2e-22 At5g58870 ftsh9 (FtsH protease 9) C.G. S.X.
0.20 3e-66 252 Vitis vinifera 1607332_at BQ797091 hypothetical protein LOC100265577 - 6e-81 At3g47060 ftsh7 (FtsH protease 7) C.G. S.X.
0.03 3e-2 40 Zea mays Zm.5805.1.A1_at AY105892.1 filamentation temperature-sensitive H 2A - 3e-69 At2g30950 VAR2 (VARIEGATED 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006508 The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with the hydrolysis of peptide bonds.
L GO:0030163 The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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