CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g58860

Gene name CYP86A1 (CYTOCHROME P450 86 A1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g58860 836003 CYP86A1 (CYTOCHROME P450 86 A1) Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed significantly only in root tissue. S.X. H.G.
0.95 97.0 At2g35380 818105 peroxidase 20 (PER20) (P20) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB S.X. H.G.
0.95 97.0 At5g37690 833748 GDSL-motif lipase/hydrolase family protein F:lipase activity, hydrolase activity, acting on ester bonds;P:lipid metabolic process;C:endomembrane system;PBFOM S.X. H.G.
0.95 97.0 At1g78990 844239 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFB S.X. H.G.
0.91 95.6 At5g44550 834482 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.89 94.6 At2g23540 816886 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM S.X. H.G.
0.84 91.9 At4g20390 827787 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.75 86.9 At2g47200 819333 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.67 81.6 At1g74460 843787 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM S.X. H.G.
0.63 78.1 At4g38080 829964 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOVBFA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
102.1 99.9 GSM184846 Arabidopsis, root, longitudinal zone 4, standard conditions, NaCl, replicate 2 GSE7639 Expression analysis of root developmental zones after treatment with salt
95.7 99.9 GSM184933 Arabidopsis, whole roots, 140 mM NaCl, 16 hour, replicate 1 GSE7642 Time course expression analysis of the salt stress response in Arabidopsis roots
75.6 99.9 E-MEXP-828-raw-cel-1156922809
63.7 99.8 E-MEXP-828-raw-cel-1156922987
57.8 99.8 GSM184845 Arabidopsis, root, longitudinal zone 4, standard conditions, NaCl, replicate 1 GSE7639 Expression analysis of root developmental zones after treatment with salt
54.9 99.8 E-MEXP-828-raw-cel-1156922968
50.1 99.8 E-MEXP-828-raw-cel-1156922905
49.3 99.8 GSM184934 Arabidopsis, whole roots, 140 mM NaCl, 16 hour, replicate 2 GSE7642 Time course expression analysis of the salt stress response in Arabidopsis roots
47.4 99.8 GSM226554 Slice12JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
47.3 99.8 GSM131378 AtGen_6-5522_Genotoxicstress-Roots-12.0h_Rep2 GSE5625 AtGenExpress: Stress Treatments (Genotoxic stress)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.10 3e-3 44 At1g01600 839347 CYP86A4 Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed significantly at highest level in mature stems and flowers. C.G. S.X.
0.08 3e-3 44 At1g63710 842675 CYP86A7 Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed at highest level in mature stems and flowers. C.G. S.X.
0.02 1e-2 42 At5g23190 832383 CYP86B1 cytochrome P450 CYP86B1, nuclear gene for chloroplast product C.G. S.X.
0.02 5e-2 40 At5g08250 830721 cytochrome P450 family protein F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:cellular_component unknown;MPFBOAV C.G. S.X.
0.09 5e-2 40 At4g00360 828019 CYP86A2 (CYTOCHROME P450 86 A2) Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed at moderate levels in flowers, leaves, roots and stems. C.G. S.X.
0.01 2e-1 38 At5g51970 835272 sorbitol dehydrogenase, putative / L-iditol 2-dehydrogenase, putative Encodes a putative sorbitol dehydrogenase that can be thiolated in vitro. C.G. S.X.
0.07 2e-1 38 At2g45970 819205 CYP86A8 Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed at moderate levels in flowers, leaves, roots and stems. C.G. S.X.
0.01 8e-1 36 At3g11310 820303 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 1e-3 46 Glycine max Gma.11025.1.S1_at CD390437 - - 2e-23 At2g45970 CYP86A8 C.G. S.X.
0.12 2e-6 54 Hordeum vulgare Contig6865_at Contig6865 - - 2e-7 At4g00360 CYP86A2 (CYTOCHROME P450 86 A2) C.G. S.X.
0.06 3e-8 61 Oryza sativa Os01g0854800 AK109676.1 - Cytochrome P450 86A1 (EC 1.14.-.-) (CYPLXXXVI)(P450-dependent fatty acid omega-hydroxylase) 3e-10 At4g00360 CYP86A2 (CYTOCHROME P450 86 A2) C.G. S.X.
0.12 3e-13 77 Populus trichocarpa PtpAffx.211547.1.S1_at pmrna22630 cytochrome P450 - 5e-42 At4g00360 CYP86A2 (CYTOCHROME P450 86 A2) C.G. S.X.
0.07 1e-5 52 Triticum aestivum Ta.254.1.S1_s_at AF123609.1 - - 2e-2 At1g01600 CYP86A4 C.G. S.X.
0.13 3e-16 85 Vitis vinifera 1621885_at CK138210.1 - - 4e-16 At5g58860 CYP86A1 (CYTOCHROME P450 86 A1) C.G. S.X.
0.09 1e-3 44 Zea mays Zm.2032.1.S1_at AW566370 F-box protein interaction domain containing protein - 2e-12 At4g00360 CYP86A2 (CYTOCHROME P450 86 A2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0010345 The chemical reactions and pathways resulting in the formation of suberin monomers and suberin polyesters. Suberin monomers are derived from fatty acids and trans-cinnamic acids. The monomers are then cross-linked with glycerols.
X GO:0006631 The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00347 Cytochrome P450

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00903 Limonene and pinene degradation
00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
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