CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g58850

Gene name MYB119 (MYB DOMAIN PROTEIN 119)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.87 93.5 At5g58850 836002 MYB119 (MYB DOMAIN PROTEIN 119) Encodes a putative transcription factor, member of the R2R3 factor gene family (MYB119). S.X. H.G.
0.73 85.5 At1g61950 842490 CPK19 member of Calcium Dependent Protein Kinase S.X. H.G.
0.72 84.8 At2g07130 3767761 - F:unknown;P:unknown;C:unknown S.X. H.G.
0.71 84.2 At4g19770 827721 glycosyl hydrolase family 18 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, chitinase activity, catalytic activity;P:carbohydrate metabolic process;C:cellular_component unknown;MBFOVPA S.X. H.G.
0.69 82.9 At4g20510 827799 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.69 82.9 At1g18310 838411 glycosyl hydrolase family 81 protein F:hydrolase activity, acting on glycosyl bonds, endo-1,3(4)-beta-glucanase activity;P:cell wall macromolecule catabolic process;C:unknown;FOBPM S.X. H.G.
0.68 82.2 At4g30970 829222 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.67 81.6 At1g57906 842163 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.66 80.1 At4g08450 826403 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;BPOMFVA S.X. H.G.
0.66 80.1 At2g41450 818743 N-acetyltransferase F:N-acetyltransferase activity;P:metabolic process;C:intracellular;MOPFB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
271.3 100.0 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
268.3 100.0 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
266.8 100.0 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
262.0 100.0 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
257.2 100.0 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
251.6 100.0 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
243.1 100.0 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
242.9 100.0 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
239.7 100.0 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
238.7 100.0 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.49 2e-105 383 At5g11050 830972 MYB64 (myb domain protein 64) Member of R2R3-MYB transcription factor gene family. C.G. S.X.
0.07 3e-12 73 At3g27785 822399 MYB118 putative transcription factor (MYB118) C.G. S.X.
0.07 1e-5 52 At5g40360 834034 MYB115 (myb domain protein 115) putative transcription factor (MYB115) C.G. S.X.
0.10 7e-4 46 At4g18770 827611 MYB98 (myb domain protein 98) MYB98 is a member of the R2R3-MYB gene family, the members of which likely encode transcription factors. Within an ovule, MYB98 is expressed exclusively in the synergid cells, and mutations in this gene affect the female gametophyte specifically. myb98 female gametophytes are affected in two unique features of the synergid cell, pollen tube guidance and the filiform apparatus, but are otherwise normal. This suggests that MYB98 controls the development of specific features within the synergid cell during female gametophyte development. MYB98 also is expressed in trichomes and endosperm. Homozygous myb98 mutants exhibit no sporophytic defects, including trichome and endosperm defects. C.G. S.X.
0.04 1e-2 42 At4g00540 827977 ATMYB3R2 (MYB DOMAIN PROTEIN 3R2) Encodes a putative c-myb-like transcription factor. Member of a class of domain proteins containing structural features of the vertebrate c-Myb proto-oncoprotein, including the presence of three Myb motifs (R1,R2,R3). C.G. S.X.
0.02 4e-2 40 At5g39230 833919 transcription initiation factor-related F:transcription regulator activity, zinc ion binding;P:regulation of transcription, DNA-dependent, regulation of transcription, transcription initiation;C:transcription factor complex;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 9e-1 36 Glycine max GmaAffx.76846.1.S1_s_at BF595224 - - 5e+0 At5g43285 - C.G. S.X.
0.02 1e+0 34 Hordeum vulgare HVSMEk0019E13r2_at HVSMEk0019E13r2 - - 4e+0 At5g28090 unknown protein C.G. S.X.
0.05 3e-1 38 Oryza sativa OsAffx.27479.1.S1_at - - - 0 C.G. S.X.
0.14 4e-6 54 Populus trichocarpa PtpAffx.200746.1.S1_at pmrna1435 hypothetical protein - 1e-17 At5g11050 MYB64 (myb domain protein 64) C.G. S.X.
0.02 7e-1 36 Triticum aestivum TaAffx.31101.1.S1_at CA619504 - - 1e+1 At1g51960 IQD27 (IQ-domain 27) C.G. S.X.
0.03 8e-1 34 Vitis vinifera 1616487_at CA811061 hypothetical protein LOC100247858 - 4e+0 At5g14930 SAG101 (SENESCENCE-ASSOCIATED GENE 101) C.G. S.X.
0.02 1e+0 34 Zea mays ZmAffx.821.1.A1_at AI770497 - - 3e+0 At3g21840 ASK7 (ARABIDOPSIS SKP1-LIKE 7) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
L GO:0045449 Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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