Gene omics information

Query gene ID At5g58580
Gene name ATL63 (ARABIDOPSIS TÓ
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4050.8At5g58580835972ATL63 (ARABIDOPSIS TÓF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVBS.X.H.G.
0.8391.4At1g72490843581unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFS.X.H.G.
0.7184.2At2g33230817885flavin-containing monooxygenase, putative / FMO, putativeF:NADP or NADPH binding, oxidoreductase activity, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:unknown;C:unknown;BOFMPAS.X.H.G.
0.6378.1At5g48130834865phototropic-responsive NPH3 family proteinF:protein binding, signal transducer activity;P:response to light stimulus;C:chloroplast;PS.X.H.G.
0.6075.7At3g01840820047protein kinase family proteinF:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, cell wall macromolecule catabolic process;C:endomembrane system;MPOFBVAS.X.H.G.
0.5974.7At2g46850819298ATP binding / protein kinase/ protein tyrosine kinaseF:protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;PMOFBVS.X.H.G.
0.4457.2At5g57420835848IAA33 (INDOLE-3-ACETIC ACID INDUCIBLE 33)Belongs to auxin inducible gene family.S.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
317.5100.0GSM184893Arabidopsis, root cells, columella root cap, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with salt
244.7100.0GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
180.1100.0GSM266668Arabidopsis, root cells, columella root cap, -Fe, replicate 3GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatment
138.399.9GSM184892Arabidopsis, root cells, columella root cap, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with salt
119.999.9GSM184912Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 3GSE7641Expression analysis of root cell-types after treatment with salt
98.399.9GSM184894Arabidopsis, root cells, columella root cap, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with salt
97.899.9E-MEXP-1443-raw-cel-1581869515
82.799.9GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
76.099.9GSM226531L1SBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
73.999.9GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.062e-654At1g53820841819zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVC.G.S.X.
0.048e-652At1g22230838828unknown proteinF:unknown;P:unknown;C:chloroplast;MOFPVBAC.G.S.X.
0.041e-448At5g22090832270unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOPFBVC.G.S.X.
0.021e-448At5g61380836259TOC1 (TIMING OF CAB EXPRESSION 1)Pseudo response regulator involved in the generation of circadian rhythms. TOC1 appears to shorten the period of circumnutation speed. TOC1 contributes to the plant fitness (carbon fixation, biomass) by influencing the circadian clock period. PRR3 may increase the stability of TOC1 by preventing interactions between TOC1 and the F-box protein ZTL. Expression of TOC1 is correlated with rhythmic changes in chromatin organization.C.G.S.X.
0.062e-344At4g15975827281protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:response to chitin;C:endomembrane system;MPFOVC.G.S.X.
0.032e-344At4g00950827948MEE47 (maternal effect embryo arrest 47)F:transcription factor activity;P:embryonic development ending in seed dormancy, regulation of transcription;C:cellular_component unknown;PMFOC.G.S.X.
0.052e-344At3g16720820924ATL2RING-H2 protein induced after exposure to chitin or inactivated crude cellulase preparations.C.G.S.X.
0.027e-342At5g25590832634-F:unknown;P:N-terminal protein myristoylation;C:unknown;MOFPBVAC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.034e-240Glycine maxHgAffx.9948.1.S1_atCB378553--3e-4At5g44120CRA1 (CRUCIFERINA)C.G.S.X.
0.042e-446Hordeum vulgareHC108A06_SK_atHC108A06_SK--8e-1At5g58280transcriptional factor B3 family proteinC.G.S.X.
0.024e-344Oryza sativaOs06g0139700AK103245.1-Conserved hypothetical protein1e+1At5g43050unknown proteinC.G.S.X.
0.073e-344Populus trichocarpaPtpAffx.204793.1.S1_x_atpmrna9444hypothetical protein-2e-8At1g72310ATL3C.G.S.X.
0.043e-240Triticum aestivumTaAffx.82096.1.S1_atCA677607--7e+0At5g06660unknown proteinC.G.S.X.
0.041e-136Vitis vinifera1621823_atCF214240hypothetical protein LOC100253216-4e+0At5g66000unknown proteinC.G.S.X.
0.032e-136Zea maysZm.3153.3.S1_a_atCF624577B12D protein-1e-3At1g20440COR47 (COLD-REGULATED 47)C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage