CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g58530

Gene name glutaredoxin family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g58530 835966 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:unknown;PMOBF S.X. H.G.
0.80 89.8 At4g26650 828772 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MPOFBVA S.X. H.G.
0.74 86.1 At1g61770 842474 DNAJ heat shock N-terminal domain-containing protein J domain protein. S.X. H.G.
0.67 81.6 At5g15470 831400 GAUT14 (Galacturonosyltransferase 14) Encodes a protein with putative galacturonosyltransferase activity. S.X. H.G.
0.61 76.7 At3g01040 821312 GAUT13 (Galacturonosyltransferase 13) Encodes a protein with putative galacturonosyltransferase activity. S.X. H.G.
0.48 62.5 At1g22200 838825 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MOFP S.X. H.G.
0.48 62.5 At4g20890 827837 TUB9 tubulin 9 S.X. H.G.
0.41 52.4 At1g06890 837199 transporter-related F:unknown;P:unknown;C:Golgi apparatus, membrane;PMFOBA S.X. H.G.
0.25 22.6 At3g07880 819979 Rho GDP-dissociation inhibitor family protein F:Rho GDP-dissociation inhibitor activity;P:biological_process unknown;C:cytoplasm;MFPO S.X. H.G.
0.23 19.3 At5g23670 832432 LCB2 Encodes the LCB2 subunit of serine palmitoyltransferase, an enzyme involved in sphingosine biosynthesis. The protein is localized to the endoplasmic reticulum. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
62.6 99.8 GSM154504 Arabidopsis desiccated mature pollen grains rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
52.3 99.8 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
50.9 99.8 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
49.6 99.8 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
46.2 99.8 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
46.1 99.8 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
45.7 99.8 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
45.7 99.8 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
39.2 99.8 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.6 99.8 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 7e-3 42 At3g01300 820989 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.01 1e-1 38 At5g52530 835329 dentin sialophosphoprotein-related F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFBPVA C.G. S.X.
0.01 1e-1 38 At5g39785 833974 structural constituent of ribosome F:structural constituent of ribosome;P:translation;C:ribosome, intracellular;OMFPBV C.G. S.X.
0.03 1e-1 38 At5g62020 836322 AT-HSFB2A member of Heat Stress Transcription Factor (Hsf) family C.G. S.X.
0.02 1e-1 38 At4g02600 828229 MLO1 A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO1 belongs to the clade II, with ATMLO13 and ATMLO15. The gene is expressed during early seedling growth, in root and cotyledon vascular system, in pollen and in papillae, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s). C.G. S.X.
0.01 1e-1 38 At3g28770 822509 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MOBFPVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 9e-3 42 Glycine max Gma.13580.3.S1_at BI973761 - - 5e-5 At5g19430 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.04 3e+0 32 Hordeum vulgare HW02P03u_x_at HW02P03u - - 5e-2 At3g12510 unknown protein C.G. S.X.
0.03 2e-1 38 Oryza sativa Os05g0595200 AK070317.1 - Allergen V5/Tpx-1 related family protein 3e-6 At1g64440 RHD1 (ROOT HAIR DEFECTIVE 1) C.G. S.X.
0.09 1e-7 57 Populus trichocarpa PtpAffx.9095.1.S1_at CV252408 hypothetical protein - 2e-7 At5g58530 glutaredoxin family protein C.G. S.X.
0.03 2e+0 34 Triticum aestivum Ta.24363.2.S1_x_at CA611887 - - 4e+0 At4g22950 AGL19 (AGAMOUS-LIKE 19) C.G. S.X.
0.04 5e-1 34 Vitis vinifera 1617592_at CB971943 hypothetical protein LOC100259923 - 6e-3 At1g62990 KNAT7 (KNOTTED-LIKE HOMEOBOX OF ARABIDOPSIS THALIANA 7) C.G. S.X.
0.03 3e+0 32 Zea mays ZmAffx.133.1.A1_at AI666263 - - 4e+0 At5g59780 MYB59 (MYB DOMAIN PROTEIN 59) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0045454 Any process that maintains the redox environment of a cell or compartment within a cell.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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