Gene omics information

Query gene ID At5g58510
Gene name unknown protein
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.8190.4At5g58510835964unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPOBS.X.H.G.
0.8089.8At1g17145838285protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;FPOMS.X.H.G.
0.7989.1At3g47220823875phosphoinositide-specific phospholipase C family proteinF:phosphoinositide phospholipase C activity, phospholipase C activity, phosphoric diester hydrolase activity;P:signal transduction, intracellular signaling cascade, lipid metabolic process;C:unknown;MPOFS.X.H.G.
0.7989.1At2g27050817247EIL1 (ETHYLENE-INSENSITIVE3-LIKE 1)ethylene-insensitive3-like1 (EIL1)S.X.H.G.
0.7687.4At1g19370838520unknown proteinF:unknown;P:unknown;C:endoplasmic reticulum;POS.X.H.G.
0.7586.9At1g05380837039DNA bindingF:DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;MPOFABS.X.H.G.
0.7486.1At1g47490841157ATRBP47C (ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47C)F:RNA binding;P:unknown;C:unknown;MPFOBVAS.X.H.G.
0.7385.5At2g26470817188unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBMFAPVS.X.H.G.
0.7284.8At1g34260840326phosphatidylinositol-4-phosphate 5-kinase family proteinF:1-phosphatidylinositol-4-phosphate 5-kinase activity, phosphatidylinositol phosphate kinase activity;P:phosphatidylinositol metabolic process;C:cellular_component unknown;MOFPAS.X.H.G.
0.7184.2At5g02910831746F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
24.799.6GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
19.999.6GSM133957Fukuda_1-2_0B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
19.299.6GSM133963Fukuda_1-8_6B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
16.999.5GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
16.599.5GSM265474Arabidopsis, whole roots, -Fe, 72 hour, rep 2GSE10502Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
16.499.5GSM265472Arabidopsis, whole roots, -Fe, 48 hour, rep 2GSE10502Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
16.299.5GSM128662Underwood_1-15_Cor-5x10e7-10h_Rep3_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.011e-346At5g66540836786-F:molecular_function unknown;P:rRNA processing;C:cytosol, nucleolus, nucleus;MOFBPVAC.G.S.X.
0.016e-344At3g57480824915zinc finger (C2H2 type, AN1-like) family proteinF:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:intracellular;MFOPC.G.S.X.
0.016e-344At2g28660817415copper-binding family proteinF:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:chloroplast;OPMBFC.G.S.X.
0.016e-344At1g76600843993unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:nucleolus, nucleus;PC.G.S.X.
0.019e-240At4g22260828321IM (IMMUTANS)Similar to mitochondrial alternative oxidase. im mutants have a variegated phenotype and fail to differentiate chloroplasts in the majority of their cells under high light intensity continuous illumination. The white tissues of immutans accumulate phytoene, a non-colored C40 carotenoid intermediate. This suggests that immutans controls, either directly or indirectly, the activity of phytoene desaturase (PDS), the enzyme that converts phytoene to zeta-carotene in higher plants. However, im is not the structural gene for PDS. It is located in the lumenar face of the thylakoid membrane. IM is expressed ubiquitously in plant tissues.C.G.S.X.
0.014e-138At5g39500833946pattern formation protein, putativeF:ARF guanyl-nucleotide exchange factor activity;P:regulation of ARF protein signal transduction;C:intracellular;MFOPBC.G.S.X.
0.014e-138At5g58440835957SNX2a (SORTING NEXIN 2a)F:phosphoinositide binding;P:signal transduction, intracellular signaling cascade;C:cellular_component unknown;MFOPABC.G.S.X.
0.014e-138At4g191002745715unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast, membrane;MOBFPVC.G.S.X.
0.014e-138At3g53110824477LOS4 (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4)Encodes a putative DEAD-Box RNA Helicase and has RNA-dependent ATPase activity. Mutant is Sensitive to chilling stress and heat stress. Germination of the mutant is inhibited by ABA. LOS4 may be involved in temperature sensing. Is enriched in the nuclear envelope and also located in the cytoplasm. LOS4 is involved in export of poly A RNA.C.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.043e-242Glycine maxGmaAffx.82299.1.S1_atBI893356--2e-1At2g07290unknown proteinC.G.S.X.
0.013e-344Hordeum vulgareContig12125_atContig12125--6e+0At3g07522unknown proteinC.G.S.X.
0.121e-30137Oryza sativaOs.7261.1.S1_at---0C.G.S.X.
0.126e-1687Populus trichocarpaPtpAffx.200915.1.S1_atpmrna1801--1e-16At5g58510unknown proteinC.G.S.X.
0.012e+036Triticum aestivumTaAffx.84172.1.S1_atCA643336--8e-1At1g49140NADH-ubiquinone oxidoreductase-relatedC.G.S.X.
0.017e-342Vitis vinifera1617073_atCF517100hypothetical protein LOC100246896-3e-1At2g0125060S ribosomal protein L7 (RPL7B)C.G.S.X.
0.023e+034Zea maysZm.18986.1.A1_atAY105093.1--6e-13At1g19330unknown proteinC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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