Gene omics information

Query gene ID At5g58410
Gene name binding / protein binding / zinc ion binding
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.7184.2At5g58410835954binding / protein binding / zinc ion bindingF:protein binding, binding, zinc ion binding;P:unknown;C:unknown;MFOPBS.X.H.G.
0.6176.7At1g03910839371-F:unknown;P:unknown;C:unknown;MOFPBVAS.X.H.G.
0.5570.6At5g58130835925RNA recognition motif (RRM)-containing proteinF:nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;BOMFPAVS.X.H.G.
0.5368.6At3g19740821511ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide bindingF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:biological_process unknown;C:mitochondrion;BOMFPAVS.X.H.G.
0.5368.6At5g49530835014SIN-like family proteinF:DNA-directed RNA polymerase activity;P:transcription;C:nucleus;MOFPBS.X.H.G.
0.4558.3At3g54540824619ATGCN4member of GCN subfamilyS.X.H.G.
0.4253.9At1g04080839314PRP39F:binding;P:regulation of timing of transition from vegetative to reproductive phase;C:intracellular;MFBOPVS.X.H.G.
0.4253.9At2g41500818748EMB2776Encodes LACHESIS (LIS), a protein with seven WD40 repeats. LIS is homologous to the yeast splicing factor PRP4 which is associated with the U4/U6 complex of the spliceosome. LIS is involved in a mechanism that prevents accessory cells from adopting gametic cell fate: lis mutant forms supernumerary egg cells.S.X.H.G.
0.4152.4At5g49930835056emb1441 (embryo defective 1441)F:zinc ion binding, nucleic acid binding;P:embryonic development ending in seed dormancy;C:cellular_component unknown;OMBFAPVS.X.H.G.
0.4152.4At3g069403768779transposable element geneF:unknown;P:unknown;C:unknownS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
45.899.8GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
45.499.8GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
32.399.7GSM133765Lindsey_1-17_torpedo-cotyledon_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
31.999.7GSM133773Lindsey_1-25_torpedo-meristem_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
18.999.5GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
17.299.5GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
16.999.5GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
16.599.5GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
15.799.5GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
15.399.4GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.012e-140At5g58100835922unknown proteinF:unknown;P:pollen exine formation;C:unknown;POABC.G.S.X.
0.012e-140At3g50560824220short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAC.G.S.X.
0.012e-140At3g24760822074F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMC.G.S.X.
0.012e-140At3g07390819927AIR12isolated from differential screening of a cDNA library from auxin-treated root culture. sequence does not show homology to any known proteins and is predicted to be extracellular.C.G.S.X.
0.007e-138At3g26720822284glycosyl hydrolase family 38 proteinF:in 6 functions;P:mannose metabolic process, carbohydrate metabolic process;C:plasma membrane, vacuole, plant-type cell wall;MOPBFAC.G.S.X.
0.017e-138At1g61400842434S-locus protein kinase, putativeF:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:cellular_component unknown;MPOBFVAC.G.S.X.
0.017e-138At1g09210837441calreticulin 2 (CRT2)F:unfolded protein binding, calcium ion binding;P:response to oxidative stress, response to salt stress;C:mitochondrion, endoplasmic reticulum, vacuole;MOFPBVAC.G.S.X.
0.003e+036At5g45200834556disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAC.G.S.X.
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Orthologous genes



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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.013e-140Glycine maxGma.17062.1.S1_atAW277440--4e-9At2g42610LSH10 (LIGHT SENSITIVE HYPOCOTYLS 10)C.G.S.X.
0.011e+036Hordeum vulgareContig18430_atContig18430--2e-2At1g18340basal transcription factor complex subunit-relatedC.G.S.X.
0.019e-242Oryza sativaOsAffx.3148.1.S1_at---0C.G.S.X.
0.086e-30135Populus trichocarpaPtpAffx.212488.1.S1_s_atpmrna24457hypothetical protein-5e-31At5g58410binding / protein binding / zinc ion bindingC.G.S.X.
0.013e+036Triticum aestivumTaAffx.91757.1.S1_atBJ303868--1e+0Atcg01110-C.G.S.X.
0.015e-240Vitis vinifera1612864_atCD713095--1e+0At4g10925F-box family proteinC.G.S.X.
0.011e+036Zea maysZm.3780.1.S1_atAW438304low-molecular-weight cysteine-rich protein LCR69-9e-2At1g47317-C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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