CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g58380

Gene name SIP1 (SOS3-INTERACTING PROTEIN 1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.57 73.8 At5g58380 835951 SIP1 (SOS3-INTERACTING PROTEIN 1) Encodes a CBL-interacting protein kinase with similarity to SOS protein kinase. S.X. H.G.
0.81 90.4 At5g61960 836317 AML1 (ARABIDOPSIS MEI2-LIKE PROTEIN 1) A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML1 is a member of two sister clades of mei2-like gene family, AML1 through AML5 and belongs to the clade named ALM14. AML1 is expressed during early embryo development, particularly along embryonic axis at torpedo stage, in shoot apex (weaker expression) and in the organogenic regions of floral apices. S.X. H.G.
0.80 89.8 At1g06700 837180 serine/threonine protein kinase, putative F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA S.X. H.G.
0.76 87.4 At4g20880 827836 ethylene-responsive nuclear protein / ethylene-regulated nuclear protein (ERT2) F:unknown;P:unknown;C:nucleus;OMFBPVA S.X. H.G.
0.73 85.5 At4g20380 827786 zinc finger protein (LSD1) LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. contains zinc-finger motifs. LSD1 negatively regulates a basal defense pathway that can act upstream or independently of both NIM1/NPR1 function and SA accumulation following avirulent or virulent pathogen challenge S.X. H.G.
0.73 85.5 At1g05960 837106 binding F:binding;P:biological_process unknown;C:plasma membrane;MFPBO S.X. H.G.
0.72 84.8 At3g07880 819979 Rho GDP-dissociation inhibitor family protein F:Rho GDP-dissociation inhibitor activity;P:biological_process unknown;C:cytoplasm;MFPO S.X. H.G.
0.72 84.8 At3g55430 824709 glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall;PFOB S.X. H.G.
0.72 84.8 At5g47620 834812 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPOFBA S.X. H.G.
0.70 83.5 At1g10740 837617 unknown protein F:unknown;P:glycerol biosynthetic process;C:endomembrane system;BOPFM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
120.9 99.9 E-ATMX-35-raw-cel-1574334880
106.9 99.9 E-ATMX-35-raw-cel-1574334864
67.1 99.8 E-MEXP-1138-raw-cel-1432772746
65.8 99.8 E-MEXP-1138-raw-cel-1432772650
64.0 99.8 E-MEXP-1138-raw-cel-1432772522
59.5 99.8 E-ATMX-35-raw-cel-1574334848
59.5 99.8 GSM131637 ATGE_73_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
56.2 99.8 E-MEXP-1138-raw-cel-1432772586
54.5 99.8 E-MEXP-285-raw-cel-440782725
54.0 99.8 E-MEXP-1138-raw-cel-1432772874
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.71 9e-170 597 At5g07070 830598 CIPK2 (CBL-INTERACTING PROTEIN KINASE 2) Encodes CBL-interacting protein kinase 2 (CIPK2). C.G. S.X.
0.06 8e-7 56 At5g01810 830556 CIPK15 (CBL-INTERACTING PROTEIN KINASE 15) Encodes a CBL-interacting serine/threonine protein kinase, also has similarities to SOS2 kinase. C.G. S.X.
0.02 2e-4 48 At2g34180 817979 CIPK13 (CBL-INTERACTING PROTEIN KINASE 13) Encodes CBL-interacting protein kinase 13 (CIPK13). C.G. S.X.
0.04 3e-3 44 At5g45810 834621 CIPK19 (CBL-INTERACTING PROTEIN KINASE 19) Encodes a member of the SNF1-related kinase (SnRK) gene family (SnRK3.5), which has also been reported as a member of the CBL-interacting protein kinases (CIPK19). C.G. S.X.
0.02 3e-3 44 At3g23000 821874 CIPK7 (CBL-INTERACTING PROTEIN KINASE 7) Encodes a serine/threonine protein kinase with similarities to CBL-interacting protein kinases, SNF1 and SOS2. C.G. S.X.
0.01 1e-2 42 At5g21222 832244 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOFBVA C.G. S.X.
0.03 5e-2 40 At4g18700 827604 CIPK12 (CBL-INTERACTING PROTEIN KINASE 12) Encodes CBL-interacting protein kinase 12 (CIPK12). C.G. S.X.
0.03 5e-2 40 At4g30960 829221 SIP3 (SOS3-INTERACTING PROTEIN 3) Encodes CBL-interacting protein kinase 6 (CIPK6). Required for development and salt tolerance. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.15 3e-22 107 Glycine max GmaAffx.51964.1.S1_at CA785524 - - 2e-20 At5g07070 CIPK2 (CBL-INTERACTING PROTEIN KINASE 2) C.G. S.X.
0.13 2e-5 50 Hordeum vulgare Contig13973_at Contig13973 - - 5e-5 At5g58380 SIP1 (SOS3-INTERACTING PROTEIN 1) C.G. S.X.
0.19 5e-19 97 Oryza sativa Os01g0824600 AK119278.1 - Protein kinase domain containing protein 2e-15 At5g58380 SIP1 (SOS3-INTERACTING PROTEIN 1) C.G. S.X.
0.35 1e-52 208 Populus trichocarpa PtpAffx.212479.1.S1_at pmrna24446 hypothetical protein - 9e-53 At5g58380 SIP1 (SOS3-INTERACTING PROTEIN 1) C.G. S.X.
0.15 2e-16 87 Triticum aestivum TaAffx.112167.1.S1_at CA626470 - - 1e-12 At5g07070 CIPK2 (CBL-INTERACTING PROTEIN KINASE 2) C.G. S.X.
0.15 5e-24 111 Vitis vinifera 1613724_at CB347931 hypothetical protein LOC100241678 - 6e-24 At5g58380 SIP1 (SOS3-INTERACTING PROTEIN 1) C.G. S.X.
0.22 1e-19 97 Zea mays Zm.3868.2.A1_a_at AY106390.1 - - 2e-19 At5g58380 SIP1 (SOS3-INTERACTING PROTEIN 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
L GO:0007165 The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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