Gene omics information

Query gene ID At5g58380
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5773.8At5g58380835951SIP1 (SOS3-INTERACTING PROTEIN 1)Encodes a CBL-interacting protein kinase with similarity to SOS protein kinase.S.X.H.G.
0.8190.4At5g61960836317AML1 (ARABIDOPSIS MEI2-LIKE PROTEIN 1)A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML1 is a member of two sister clades of mei2-like gene family, AML1 through AML5 and belongs to the clade named ALM14. AML1 is expressed during early embryo development, particularly along embryonic axis at torpedo stage, in shoot apex (weaker expression) and in the organogenic regions of floral apices.S.X.H.G.
0.8089.8At1g06700837180serine/threonine protein kinase, putativeF:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAS.X.H.G.
0.7687.4At4g20880827836ethylene-responsive nuclear protein / ethylene-regulated nuclear protein (ERT2)F:unknown;P:unknown;C:nucleus;OMFBPVAS.X.H.G.
0.7385.5At4g20380827786zinc finger protein (LSD1)LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. contains zinc-finger motifs. LSD1 negatively regulates a basal defense pathway that can act upstream or independently of both NIM1/NPR1 function and SA accumulation following avirulent or virulent pathogen challengeS.X.H.G.
0.7385.5At1g05960837106bindingF:binding;P:biological_process unknown;C:plasma membrane;MFPBOS.X.H.G.
0.7284.8At3g07880819979Rho GDP-dissociation inhibitor family proteinF:Rho GDP-dissociation inhibitor activity;P:biological_process unknown;C:cytoplasm;MFPOS.X.H.G.
0.7284.8At3g55430824709glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putativeF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall;PFOBS.X.H.G.
0.7284.8At5g47620834812heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putativeF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPOFBAS.X.H.G.
0.7083.5At1g10740837617unknown proteinF:unknown;P:glycerol biosynthetic process;C:endomembrane system;BOPFMS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
59.599.8GSM131637ATGE_73_BGSE5632AtGenExpress: Developmental series (flowers and pollen)
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.719e-170597At5g07070830598CIPK2 (CBL-INTERACTING PROTEIN KINASE 2)Encodes CBL-interacting protein kinase 2 (CIPK2).C.G.S.X.
0.068e-756At5g01810830556CIPK15 (CBL-INTERACTING PROTEIN KINASE 15)Encodes a CBL-interacting serine/threonine protein kinase, also has similarities to SOS2 kinase.C.G.S.X.
0.022e-448At2g34180817979CIPK13 (CBL-INTERACTING PROTEIN KINASE 13)Encodes CBL-interacting protein kinase 13 (CIPK13).C.G.S.X.
0.043e-344At5g45810834621CIPK19 (CBL-INTERACTING PROTEIN KINASE 19)Encodes a member of the SNF1-related kinase (SnRK) gene family (SnRK3.5), which has also been reported as a member of the CBL-interacting protein kinases (CIPK19).C.G.S.X.
0.023e-344At3g23000821874CIPK7 (CBL-INTERACTING PROTEIN KINASE 7)Encodes a serine/threonine protein kinase with similarities to CBL-interacting protein kinases, SNF1 and SOS2.C.G.S.X.
0.011e-242At5g21222832244protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOFBVAC.G.S.X.
0.035e-240At4g18700827604CIPK12 (CBL-INTERACTING PROTEIN KINASE 12)Encodes CBL-interacting protein kinase 12 (CIPK12).C.G.S.X.
0.035e-240At4g30960829221SIP3 (SOS3-INTERACTING PROTEIN 3)Encodes CBL-interacting protein kinase 6 (CIPK6). Required for development and salt tolerance.C.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.153e-22107Glycine maxGmaAffx.51964.1.S1_atCA785524--2e-20At5g07070CIPK2 (CBL-INTERACTING PROTEIN KINASE 2)C.G.S.X.
0.132e-550Hordeum vulgareContig13973_atContig13973--5e-5At5g58380SIP1 (SOS3-INTERACTING PROTEIN 1)C.G.S.X.
0.195e-1997Oryza sativaOs01g0824600AK119278.1-Protein kinase domain containing protein2e-15At5g58380SIP1 (SOS3-INTERACTING PROTEIN 1)C.G.S.X.
0.351e-52208Populus trichocarpaPtpAffx.212479.1.S1_atpmrna24446hypothetical protein-9e-53At5g58380SIP1 (SOS3-INTERACTING PROTEIN 1)C.G.S.X.
0.152e-1687Triticum aestivumTaAffx.112167.1.S1_atCA626470--1e-12At5g07070CIPK2 (CBL-INTERACTING PROTEIN KINASE 2)C.G.S.X.
0.155e-24111Vitis vinifera1613724_atCB347931hypothetical protein LOC100241678-6e-24At5g58380SIP1 (SOS3-INTERACTING PROTEIN 1)C.G.S.X.
0.221e-1997Zea maysZm.3868.2.A1_a_atAY106390.1--2e-19At5g58380SIP1 (SOS3-INTERACTING PROTEIN 1)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0006468The process of introducing a phosphate group on to a protein.
LGO:0007165The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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