CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g58310

Gene name MES18 (METHYL ESTERASE 18)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g58310 835943 MES18 (METHYL ESTERASE 18) Encodes a protein shown to have methyl IAA esterase activity in vitro. This protein does not act on methyl JA, MeSA, MeGA4, or MEGA9 in vitro. S.X. H.G.
0.40 50.8 At2g40100 818599 LHCB4.3 (light harvesting complex PSII) Lhcb4:3 protein (Lhcb4.3, light harvesting complex of photosystem II S.X. H.G.
0.40 50.8 At3g62410 825414 CP12-2 CP12-2 encodes a small peptide found in the chloroplast stroma. It belongs to the CP12 gene family thought to be involved in the formation of a supramolecular complex with glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and phosphoribulokinase (PRK) embedded in the Calvin cycle. CP12-2 is coordinately regulated by light with the photosynthetic GAPDH and PRK. The annotation of this gene is based on article 32494. S.X. H.G.
0.29 30.3 At3g01440 821143 oxygen evolving enhancer 3 (PsbQ) family protein F:calcium ion binding;P:photosynthesis, light reaction;C:chloroplast thylakoid membrane, chloroplast photosystem II, chloroplast thylakoid lumen, chloroplast, oxygen evolving complex;P S.X. H.G.
0.13 5.8 At1g14150 837974 oxygen evolving enhancer 3 (PsbQ) family protein F:calcium ion binding;P:photosynthesis;C:chloroplast thylakoid membrane, chloroplast photosystem II, chloroplast thylakoid lumen, chloroplast;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
72.3 99.9 E-MEXP-449-raw-cel-676423036
68.0 99.9 E-MEXP-739-raw-cel-1099467357
65.2 99.8 GSM260879 A2-Greco-WT GSE10322 Higher order transcriptional regulation conferred by the bountiful gain of function mutant
64.0 99.8 E-MEXP-739-raw-cel-1099467348
50.9 99.8 E-MEXP-1360-raw-cel-1561600590
44.1 99.8 E-MEXP-1344-raw-cel-1559561593
39.3 99.8 E-MEXP-503-raw-cel-821666228
34.5 99.7 GSM142819 SS002_ATH1_A11-smith-24h_repeat GSE6174 Gene expression and carbohydrate metabolism through the diurnal cycle
34.1 99.7 GSM131155 AtGen_C-5_2-C-12_REP2_ATH1 GSE5616 AtGenExpress: Response to Phytophthora infestans
32.7 99.7 GSM131159 AtGen_C-9_3-C-24_REP3_ATH1 GSE5616 AtGenExpress: Response to Phytophthora infestans
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 3e-2 40 At3g57350 824902 - F:molecular_function unknown;P:transport;C:nuclear pore;MFPBO C.G. S.X.
0.01 3e-2 40 At2g41620 818760 nucleoporin interacting component family protein F:molecular_function unknown;P:transport;C:nucleolus;MFPO C.G. S.X.
0.02 1e-1 38 At4g27500 828859 PPI1 (PROTON PUMP INTERACTOR 1) interacts with H+-ATPase, and regulates its activity C.G. S.X.
0.02 4e-1 36 At5g38220 833804 hydrolase F:hydrolase activity;P:biological_process unknown;C:cellular_component unknown;OBMPFV C.G. S.X.
0.04 4e-1 36 At4g09900 826580 MES12 (METHYL ESTERASE 12) Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco. This protein does not act on methyl IAA, methyl JA, MeSA, MeGA4, or MEGA9 in vitro. C.G. S.X.
0.01 4e-1 36 At1g15130 838077 hydroxyproline-rich glycoprotein family protein F:unknown;P:unknown;C:unknown;MPFOBVA C.G. S.X.
0.01 2e+0 34 At4g39680 830123 SAP domain-containing protein F:DNA binding, nucleic acid binding;P:biological_process unknown;C:cytosol, nucleus, chloroplast;MPOFBVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 1e-1 38 Glycine max GmaAffx.66902.1.S1_at AW781053 - - 6e-2 At5g58310 MES18 (METHYL ESTERASE 18) C.G. S.X.
0.03 3e+0 32 Hordeum vulgare HVSMEm0022L18r2_at HVSMEm0022L18r2 - - 3e+0 At4g35900 FD C.G. S.X.
0.03 3e+0 34 Oryza sativa OsAffx.21820.2.S1_x_at - - - 0 C.G. S.X.
0.04 1e-1 38 Populus trichocarpa PtpAffx.74829.1.S1_at CV259158 hypothetical protein - 2e-4 At4g16690 MES16 (METHYL ESTERASE 16) C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.112151.1.S1_at CA626642 - - 1e+0 At5g58310 MES18 (METHYL ESTERASE 18) C.G. S.X.
0.03 5e-1 34 Vitis vinifera 1615306_at CD800868 hypothetical protein LOC100260392 - 1e+0 At5g58310 MES18 (METHYL ESTERASE 18) C.G. S.X.
0.03 1e+1 30 Zea mays ZmAffx.656.2.A1_at AI715032 - - 1e+0 At3g27329 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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