CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g58240

Gene name bis(5'-adenosyl)-triphosphatase, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.50 65.3 At5g58240 835936 bis(5'-adenosyl)-triphosphatase, putative Encodes a Fhit protein. Has nucleoside phosphoramidase and adenylylsulfatase activities. S.X. H.G.
0.57 73.8 At5g55160 835609 SUMO2 (SMALL UBIQUITIN-LIKE MODIFIER 2) Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets. SUMO2 can form SUMO chains through lysine residue 10 during in vitro assays. S.X. H.G.
0.55 70.6 At4g02610 828226 tryptophan synthase, alpha subunit, putative F:tryptophan synthase activity;P:tryptophan biosynthetic process;C:chloroplast;BOAFPM S.X. H.G.
0.33 38.1 At5g63670 836487 SPT42 (SPT4 HOMOLOG 2) F:positive transcription elongation factor activity, zinc ion binding;P:positive regulation of transcription, N-terminal protein myristoylation;C:nucleus;MFOP S.X. H.G.
0.26 24.4 At3g52090 824372 NRPB11 Non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB11 and the E. oli RNA polymerase alpha subunit. S.X. H.G.
0.20 14.4 At1g73820 843718 Ssu72-like family protein F:phosphoprotein phosphatase activity;P:mRNA processing;C:chloroplast;MFPO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
16.8 99.5 GSM133758 Lindsey_1-11_heart-stage-root_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
16.7 99.5 E-MEXP-1797-raw-cel-1669768084
16.4 99.5 E-MEXP-1797-raw-cel-1669767967
15.4 99.5 E-MEXP-1797-raw-cel-1669767940
14.4 99.4 E-MEXP-1797-raw-cel-1669768030
13.0 99.4 E-MEXP-1797-raw-cel-1669768021
12.6 99.3 E-MEXP-1797-raw-cel-1669768003
12.6 99.3 E-MEXP-1797-raw-cel-1669768066
12.1 99.3 E-ATMX-31-raw-cel-1516947899
12.0 99.3 E-MEXP-1797-raw-cel-1669768075
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 2e-2 40 At2g27170 817259 TTN7 (TITAN7) cohesin C.G. S.X.
0.03 7e-2 38 At5g60030 836125 unknown protein F:unknown;P:unknown;C:unknown;MOFBPVA C.G. S.X.
0.02 7e-2 38 At1g50250 841447 FTSH1 (FtsH protease 1) encodes an FTSH protease that is localized to the chloroplast. Involved in the D1 repair cycle of Photosystem II. FtsH1 and FtsH5 are interchangeable in thylakoid membranes. C.G. S.X.
0.02 3e-1 36 At5g20080 832130 NADH-cytochrome b5 reductase, putative F:cytochrome-b5 reductase activity, electron carrier activity, oxidoreductase activity;P:response to salt stress;C:mitochondrion, plant-type cell wall;BOFMPA C.G. S.X.
0.02 3e-1 36 At2g15430 816035 NRPB3 Non-catalytic subunit of nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB3 and the E. coli RNA polymerase alpha subunit. A closely related paralog, encoded by At2g15400, can substitute for At2g15430 in the context of Pol V. C.G. S.X.
0.02 3e-1 36 At2g15400 816032 NRPE3B Non-catalytic subunit of Nuclear DNA-dependent RNA polymerase V; homologous to budding yeast RPB3 and the E. coli RNA polymerase alpha subunit. A closely related paralog, At2g15430 can substitute for At2g15400 in the context of Pol V and encodes the equivalent subunit of Pol II and Pol IV. C.G. S.X.
0.01 3e-1 36 At2g26570 817198 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOBFPAV C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.15 2e-15 83 Glycine max Gma.3688.1.S1_at BI784695 - - 1e-15 At5g58240 bis(5'-adenosyl)-triphosphatase, putative C.G. S.X.
0.16 4e-11 67 Hordeum vulgare Contig11172_at Contig11172 - - 1e-10 At5g58240 bis(5'-adenosyl)-triphosphatase, putative C.G. S.X.
0.04 2e+0 34 Oryza sativa OsAffx.28530.1.S1_at - - - 0 C.G. S.X.
0.28 1e-25 117 Populus trichocarpa PtpAffx.78798.1.S1_a_at CV237881 hypothetical protein - 1e-25 At5g58240 bis(5'-adenosyl)-triphosphatase, putative C.G. S.X.
0.04 1e+0 34 Triticum aestivum Ta.17704.1.S1_at CA623606 - - 3e-12 At3g55280 RPL23AB (RIBOSOMAL PROTEIN L23AB) C.G. S.X.
0.19 6e-12 69 Vitis vinifera 1615129_at CF518930 hypothetical protein LOC100256954 - 3e-11 At5g58240 bis(5'-adenosyl)-triphosphatase, putative C.G. S.X.
0.22 2e-12 71 Zea mays Zm.13459.1.A1_at CO532418 hypothetical protein LOC100279797 - 7e-12 At5g58240 bis(5'-adenosyl)-triphosphatase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0009117 The chemical reactions and pathways involving a nucleotide, a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic nucleotides (nucleoside cyclic phosphates).
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00230 Purine metabolism
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