Gene omics information

Query gene ID At5g58140
Gene name PHOT2 (PHOTOTROPIN 2)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g58140835926PHOT2 (PHOTOTROPIN 2)Membrane-bound protein serine/threonine kinase that functions as blue light photoreceptor in redundancy with PHO1. Involved in stomatal opening, chloroplast movement and phototropism. Mediates blue light-induced growth enhancements. PHOT1 and PHOT2 mediate blue light-dependent activation of the plasma membrane H+-ATPase in guard cell protoplasts. PHOT2 possesses two LOV (LOV1 and LOV2, for light-oxygen-voltage-sensing) domains involved in FMN-binding and a C-terminus forming a serine/threonine kinase domain. LOV2 acts as an inhibitor of phototropin kinase in the dark, and light cancels the inhibition through cysteine-FMN adduct formation. LOV1 in contrast acts as an attenuator of photoactivation. Localized to the Golgi apparatus under the induction of blue light.S.X.H.G.
0.4761.2At5g10470830911kinesin motor protein-relatedF:microtubule motor activity, ATP binding;P:microtubule-based movement;C:plasma membrane, membrane, chloroplast envelope;MOFPBAVS.X.H.G.
0.4050.8At3g48200823977unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOPS.X.H.G.
0.2217.5At1g01790837332KEA1 (K EFFLUX ANTIPORTER 1)K efflux antiporter KEA1S.X.H.G.
0.2014.4At5g42310834236pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:unknown;C:chloroplast;POMFBAS.X.H.G.
0.146.8At4g33010829438AtGLDP1 (Arabidopsis thaliana glycine decarboxylase P-protein 1)F:glycine dehydrogenase (decarboxylating) activity, pyridoxal phosphate binding, catalytic activity;P:glycine catabolic process, glycine decarboxylation via glycine cleavage system;C:mitochondrion, apoplast, glycine cleavage complex, chloroplast, chloroplast envelope;OBFAMPS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
28.499.7E-MEXP-1443-raw-cel-1581869515
19.999.6E-MEXP-1443-raw-cel-1581869573
12.599.3GSM244443Arabidopsis wild-type_T0 (not inoculated)_biological rep2_exp2GSE9674Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
12.399.3GSM38670DSNPGSE2268Arabidopsis polysome microarray
12.399.3GSM269833T8 leaf-drought-rep3GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
11.699.3GSM38668NSNPGSE2268Arabidopsis polysome microarray
11.699.3GSM269831T6 leaf-drought-rep3GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
11.199.2GSM260879A2-Greco-WTGSE10322Higher order transcriptional regulation conferred by the bountiful gain of function mutant
10.599.2GSM128718Pieterse_1-4_Control-72h_Rep1_ATH1GSE5525Transcriptome changes of Arabidopsis during pathogen and insect attack
10.199.2E-MEXP-509-raw-cel-829148772
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.073e-20101At3g45780823721PHOT1 (PHOTOTROPIN 1)Blue-light photoreceptor. Contains a light activated serine-threonine kinase domain and LOV1 and LOV2 repeats. Mutants are defective in blue-light response. Mediates blue light-induced growth enhancements. PHOT1 and PHOT2 mediate blue light-dependent activation of the plasma membrane H+-ATPase in guard cell protoplasts. PHOT1 undergoes blue-light-dependent autophosphorylation. At least eight phosphorylation sites have been identified in PHOT1. Phosphorylation of serine851 in the activation loop of PHOT1 appears to be required for stomatal opening, chloroplast accumulation, leaf flattening, and phototropism, and phosphorylation of serine849 may also contribute to the regulation of these responses. Phosphorylation-dependent binding of 14-3-3 proteins to the Hinge1 region of PHOT1 appears to require serine350 and serine376.C.G.S.X.
0.012e-242At4g14330827075phragmoplast-associated kinesin-related protein 2 (PAKRP2)F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:phragmoplast;MOFPBAVC.G.S.X.
0.012e-242At3g29160822566AKIN11 (Arabidopsis SNF1 kinase homolog 11)encodes a SNF1-related protein kinase that physically interacts with SCF subunit SKP1/ASK1 and 20S proteosome subunit PAD1. It has also been shown to interact with the WD protein PDL1.C.G.S.X.
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Orthologous genes



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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.172e-43178Glycine maxGma.12578.1.S1_atCD391694--3e-44At5g58140PHOT2 (PHOTOTROPIN 2)C.G.S.X.
0.093e-1893Hordeum vulgareContig11167_atContig11167--1e-17At3g45780PHOT1 (PHOTOTROPIN 1)C.G.S.X.
0.141e-30137Oryza sativaOs04g0304200AB018443.1-Nonphototropic hypocotyl protein 1 (EC 2.7.1.37)(Phototropin)6e-31At5g58140PHOT2 (PHOTOTROPIN 2)C.G.S.X.
0.448e-40167Populus trichocarpaPtpAffx.204360.1.S1_x_atpmrna8570hypothetical protein-5e-40At5g58140PHOT2 (PHOTOTROPIN 2)C.G.S.X.
0.019e-240Triticum aestivumTa.4890.2.S1_atBJ273418--1e+0At4g19260kelch repeat-containing proteinC.G.S.X.
0.044e-756Vitis vinifera1613085_atCB969437hypothetical protein LOC100262213-3e-34At3g45780PHOT1 (PHOTOTROPIN 1)C.G.S.X.
0.097e-1685Zea maysZm.1519.1.S1_atAF033263.1blue-light receptor phototropin 1-5e-16At3g45780PHOT1 (PHOTOTROPIN 1)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009637A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a blue light stimulus. Blue light is electromagnetic radiation with a wavelength of between 440 and 500nm.
XGO:0010362Any process by which the blue light stops, prevents or reduces the frequency, rate, or extent of the anion channel activity.
XGO:0010118The process of opening or closing of stomata, which is directly related to the stomatal conductance (measuring rate of passage of either water vapor or carbon dioxide (CO2) through stomata).
XGO:0009638The movement of an organism, or part of an organism, in response to a light stimulus, usually toward or away from it.
SGO:0046777The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein.
SGO:0009902The process by which chloroplasts in photosynthetic cells migrate toward illuminated sites to optimize photosynthesis and move away from excessively illuminated areas to protect the photosynthetic machinery.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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