CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g58100

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g58100 835922 unknown protein F:unknown;P:pollen exine formation;C:unknown;POAB S.X. H.G.
0.66 80.1 At5g06120 830499 Ran-binding protein, putative F:protein transporter activity, binding;P:intracellular protein transport, protein import into nucleus, docking;C:nucleus, nuclear pore, cytoplasm;MOP S.X. H.G.
0.65 79.6 At2g25760 817118 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MBOPFVA S.X. H.G.
0.65 79.6 At2g46560 819268 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:unknown;C:CUL4 RING ubiquitin ligase complex;BFMOP S.X. H.G.
0.64 78.9 At5g38880 833879 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPA S.X. H.G.
0.63 78.1 At5g27970 832867 binding F:binding;P:biological_process unknown;C:cellular_component unknown;MFOPB S.X. H.G.
0.63 78.1 At1g80930 844433 MIF4G domain-containing protein / MA3 domain-containing protein F:protein binding, RNA binding, binding;P:translation, RNA metabolic process;C:cytosol, nucleus;MOFBPVA S.X. H.G.
0.61 76.7 At5g15680 831422 binding F:binding;P:biological_process unknown;C:plasma membrane, membrane;MFPO S.X. H.G.
0.58 73.8 At2g36720 818244 PHD finger transcription factor, putative F:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:nucleus;MPFO S.X. H.G.
0.57 73.8 At3g33530 823149 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:chloroplast;MOPF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
12.4 99.3 GSM142645 MC002_ATH1_A8.2-dubos-aih GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
11.5 99.3 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
11.2 99.2 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
10.7 99.2 GSM142646 MC002_ATH1_A8.3-dubos-aih GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
9.9 99.1 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
9.8 99.1 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
9.8 99.1 GSM134204 Murray_3-2_D3-GROWTH_Rep1_ATH1 GSE5750 Growth of suspension-cultured cells
9.7 99.1 GSM142629 MC002_ATH1_A3.1-dubos-6kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
9.5 99.1 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
9.5 99.1 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 9e-2 40 At5g58410 835954 binding / protein binding / zinc ion binding F:protein binding, binding, zinc ion binding;P:unknown;C:unknown;MFOPB C.G. S.X.
0.01 4e-1 38 At5g36700 833635 PGLP1 (2-PHOSPHOGLYCOLATE PHOSPHATASE 1) F:phosphoglycolate phosphatase activity;P:metabolic process;C:chloroplast stroma, chloroplast;BOMFAP C.G. S.X.
0.01 4e-1 38 At5g36790 833646 phosphoglycolate phosphatase, putative F:hydrolase activity, phosphatase activity, phosphoglycolate phosphatase activity, catalytic activity;P:metabolic process;C:apoplast, nucleus, chloroplast stroma, vacuole, cytoplasm;BOMFAP C.G. S.X.
0.01 4e-1 38 At5g02030 831745 RPL (REPLUMLESS) Mutant has additional lateral organs and phyllotaxy defect. Encodes a homeodomain transcription factor. Has sequence similarity to the Arabidopsis ovule development regulator Bell1. Binds directly to the AGAMOUS cis-regulatory element. Its localization to the nucleus is dependent on the coexpression of either STM or BP. C.G. S.X.
0.01 4e-1 38 At4g33750 - - - C.G. S.X.
0.01 4e-1 38 At2g05230 815071 DNAJ heat shock N-terminal domain-containing protein F:heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMPFAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.16 6e-47 190 Glycine max Gma.8209.1.S1_at BU546771 - - 2e-47 At5g58100 unknown protein C.G. S.X.
0.01 3e+0 34 Hordeum vulgare EBem10_SQ004_H14_at EBem10_SQ004_H14 - - 5e+0 At2g42390 protein kinase C substrate, heavy chain-related C.G. S.X.
0.07 1e-5 54 Oryza sativa Os02g0469200 AK066401.1 - Conserved hypothetical protein 7e-6 At5g58100 unknown protein C.G. S.X.
0.38 6e-53 210 Populus trichocarpa PtpAffx.217252.1.S1_at pmrna32439 hypothetical protein - 3e-53 At5g58100 unknown protein C.G. S.X.
0.08 2e-6 56 Triticum aestivum TaAffx.51901.1.S1_at CA716758 - - 2e-7 At5g58100 unknown protein C.G. S.X.
0.01 1e-1 38 Vitis vinifera 1607435_at CF513118 - - 2e-2 At2g23755 unknown protein C.G. S.X.
0.01 2e-1 38 Zea mays ZmAffx.189.2.S1_a_at AI668397 - - 8e-1 At1g70510 KNAT2 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0010584 The formation of the pollen exine. The reticulate pollen wall pattern consists of two layers, exine and intine.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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