CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g57940

Gene name ATCNGC5 (CYCLIC NUCLEOTIDE GATED CHANNEL 5)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g57940 835905 ATCNGC5 (CYCLIC NUCLEOTIDE GATED CHANNEL 5) member of Cyclic nucleotide gated channel family S.X. H.G.
0.40 50.8 At3g01560 821110 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPBVA S.X. H.G.
0.40 50.8 At5g09670 830826 loricrin-related F:molecular_function unknown;P:biological_process unknown;C:unknown;MOPBFV S.X. H.G.
0.18 11.4 At2g31820 817739 ankyrin repeat family protein F:protein binding;P:unknown;C:plasma membrane;MOFBPVA S.X. H.G.
0.01 0.2 At1g25420 839128 unknown protein F:unknown;P:biological_process unknown;C:unknown;PMFO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
40.5 99.8 GSM142642 MC002_ATH1_A7.2-dubos-wLh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
35.1 99.7 GSM142641 MC002_ATH1_A7.1-dubos-wLh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
35.1 99.7 GSM142643 MC002_ATH1_A7.3-dubos-wLh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
27.3 99.7 GSM142644 MC002_ATH1_A8.1-dubos-aih GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
26.2 99.7 GSM142646 MC002_ATH1_A8.3-dubos-aih GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
24.9 99.6 GSM142623 MC002_ATH1_A1.1-dubos-wtx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
24.6 99.6 GSM142630 MC002_ATH1_A3.2-dubos-6kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
24.1 99.6 GSM142645 MC002_ATH1_A8.2-dubos-aih GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
23.7 99.6 GSM142640 MC002_ATH1_A6.3-dubos-5kc GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
21.6 99.6 GSM142629 MC002_ATH1_A3.1-dubos-6kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.45 3e-106 387 At4g30560 829179 ATCNGC9 (CYCLIC NUCLEOTIDE GATED CHANNEL 9) member of Cyclic nucleotide gated channel family C.G. S.X.
0.35 3e-75 284 At2g23980 816931 ATCNGC6 member of Cyclic nucleotide gated channel family C.G. S.X.
0.17 9e-20 99 At1g19780 838566 ATCNGC8 (CYCLIC NUCLEOTIDE GATED CHANNEL 8) member of Cyclic nucleotide gated channel family C.G. S.X.
0.22 2e-17 91 At1g15990 838169 ATCNGC7 (CYCLIC NUCLEOTIDE GATED CHANNEL 7) member of Cyclic nucleotide gated channel family C.G. S.X.
0.09 7e-8 59 At4g30360 829159 ATCNGC17 member of Cyclic nucleotide gated channel family C.G. S.X.
0.04 3e-4 48 At2g28260 817372 ATCNGC15 member of Cyclic nucleotide gated channel family C.G. S.X.
0.01 1e-3 46 At5g53130 835393 CNGC1 (CYCLIC NUCLEOTIDE GATED CHANNEL 1) member of Cyclic nucleotide gated channel family C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.19 9e-30 133 Glycine max Gma.1806.1.S1_at BI971557 - - 5e-26 At2g23980 ATCNGC6 C.G. S.X.
0.04 5e-4 46 Hordeum vulgare Contig14060_at Contig14060 - - 3e-3 At4g30360 ATCNGC17 C.G. S.X.
0.11 4e-8 61 Oryza sativa Os04g0643600 AK105170.1 - Cyclic nucleotide-gated channel C (Fragment) 9e-9 At5g57940 ATCNGC5 (CYCLIC NUCLEOTIDE GATED CHANNEL 5) C.G. S.X.
0.36 2e-73 278 Populus trichocarpa PtpAffx.5963.1.S1_s_at CV243600 hypothetical protein - 7e-112 At2g23980 ATCNGC6 C.G. S.X.
0.04 7e-2 40 Triticum aestivum Ta.28428.1.A1_at CD916734 - - 5e+0 At3g17240 mtLPD2 (LIPOAMIDE DEHYDROGENASE 2) C.G. S.X.
0.03 3e-4 46 Vitis vinifera 1620337_at CF213940 similar to ATCNGC5 (CYCLIC NUCLEOTIDE GATED CHANNEL 5); calmodulin binding / cyclic nucleotide binding / potassium channel - 2e-5 At5g62500 ATEB1B (END BINDING PROTEIN 1B) C.G. S.X.
0.04 2e-6 54 Zea mays Zm.14867.2.A1_at CO532033 cyclic nucleotide-gated ion channel 14 - 1e-6 At5g57940 ATCNGC5 (CYCLIC NUCLEOTIDE GATED CHANNEL 5) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006811 The directed movement of charged atoms or small charged molecules into, out of, within or between cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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