CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g57850

Gene name aminotransferase class IV family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.70 83.5 At5g57850 835895 aminotransferase class IV family protein F:4-amino-4-deoxychorismate lyase activity, catalytic activity;P:tetrahydrofolate biosynthetic process;C:chloroplast;BOAPF S.X. H.G.
0.55 70.6 At2g19940 816513 N-acetyl-gamma-glutamyl-phosphate reductase/ NAD or NADH binding / binding / catalytic/ oxidoreductase, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor / protein dimerization F:in 6 functions;P:amino acid metabolic process, response to cadmium ion;C:nucleolus, chloroplast stroma, chloroplast, membrane;BOAFP S.X. H.G.
0.45 58.3 At5g04710 830349 aspartyl aminopeptidase, putative F:aminopeptidase activity, zinc ion binding;P:proteolysis;C:chloroplast, vacuole;BOFMPA S.X. H.G.
0.44 57.2 At2g39080 818494 binding / catalytic F:binding, catalytic activity;P:metabolic process;C:chloroplast stroma, chloroplast;BOPA S.X. H.G.
0.43 55.3 At3g13490 820551 OVA5 (OVULE ABORTION 5) Encodes a dual targeted lysyl-tRNA ligase that is found both in the mitochondrion and the chloroplast. Plants mutated in this gene exhibit an ovule abortion phenotype. S.X. H.G.
0.43 55.3 At1g15710 838140 prephenate dehydrogenase family protein F:binding, prephenate dehydrogenase (NADP+) activity, catalytic activity;P:tyrosine biosynthetic process, metabolic process;C:chloroplast;BOFPAM S.X. H.G.
0.42 53.9 At5g02250 830864 EMB2730 (EMBRYO DEFECTIVE 2730) Encodes a exoribonuclease involved in rRNA processing in mitochondria and chloroplasts.Loss of function mutations are pale green and require supplementation with sucrose for germination and early development. Plants are pale green due to defects in chloroplast biogenesis. S.X. H.G.
0.41 52.4 At1g80600 844399 WIN1 (HOPW1-1-INTERACTING 1) Encodes HopW1-1-Interacting protein 1 (WIN1). Interacts with the P. syringae effector HopW1-1. WIN1 is a putative acetylornithine transaminase. Modulates plant defenses against bacteria. Three WIN proteins are identified so far (WIN1: AT1G80600; WIN2: AT4G31750; WIN3: AT5G13320). S.X. H.G.
0.40 50.8 At1g19800 838568 TGD1 (TRIGALACTOSYLDIACYLGLYCEROL 1) Encodes a permease-Like protein involved in lipid transfer from the ER to the chloroplast, more specifically, transfer of phosphatidate across the chloroplast inner membrane. Mutant leaves accumulate trigalactosyldiacylglycerol, triacylglycerol and phosphatidate. Chloroplast lipids are altered in their fatty acid composition and as a consequence the development of chloroplasts in the mutants are impacted. The mutant seeds has a higher abortion rate. S.X. H.G.
0.40 50.8 At4g33480 829485 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOPF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
27.1 99.7 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
22.0 99.6 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
21.7 99.6 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
21.1 99.6 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
20.9 99.6 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
20.7 99.6 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
20.3 99.6 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
19.8 99.6 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
19.5 99.6 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
18.5 99.5 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 9e-3 42 At5g36228 3771323 nucleic acid binding / zinc ion binding F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 6e-1 36 At2g33880 817958 HB-3 Encodes a protein with similarity to WUS type homeodomain protein. Required for meristem growth and development and acts through positive regulation of WUS. Loss of function phenotypes include embryo lethality, hyponastic cotyledons, reduced root development and smaller meristems. Phenotypes can be rescued by addition of sucrose in the growth media. C.G. S.X.
0.01 2e+0 34 At5g45720 834611 ATP binding / DNA binding / DNA-directed DNA polymerase/ nucleoside-triphosphatase/ nucleotide binding F:nucleoside-triphosphatase activity, DNA binding, DNA-directed DNA polymerase activity, nucleotide binding, ATP binding;P:DNA replication;C:DNA polymerase III complex;OBMFAPV C.G. S.X.
0.01 2e+0 34 At4g33945 829540 armadillo/beta-catenin repeat family protein F:binding;P:biological_process unknown;C:cellular_component unknown;MPOF C.G. S.X.
0.01 2e+0 34 At3g12850 820467 COP9 signalosome complex-related / CSN complex-related F:unknown;P:biological_process unknown;C:cellular_component unknown;MPO C.G. S.X.
0.01 2e+0 34 At3g20360 821580 meprin and TRAF homology domain-containing protein / MATH domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POFM C.G. S.X.
0.01 2e+0 34 At3g45720 823714 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;PBMOFA C.G. S.X.
0.02 2e+0 34 At2g21620 816700 RD2 Encodes gene that is induced in response to dessication; mRNA expression is seen 10 and 24 hrs after start of dessication treatment. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 8e-1 36 Glycine max Gma.4839.2.S1_at BI974385 - - 4e-1 At5g57850 aminotransferase class IV family protein C.G. S.X.
0.03 3e-4 46 Hordeum vulgare Contig24207_at Contig24207 - - 4e-4 At5g57850 aminotransferase class IV family protein C.G. S.X.
0.06 1e-3 46 Oryza sativa Os02g0273100 AK061985.1 - Aminotransferase, class IV family protein 1e-3 At5g57850 aminotransferase class IV family protein C.G. S.X.
0.17 6e-11 69 Populus trichocarpa PtpAffx.36616.1.S1_at CV228724 hypothetical protein - 4e-11 At5g57850 aminotransferase class IV family protein C.G. S.X.
0.03 1e-1 38 Triticum aestivum Ta.27519.1.A1_at BT009181.1 - - 3e-1 At2g43130 ARA4 C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1616949_at CF519047 hypothetical protein LOC100250114 - 2e-34 At5g53170 FTSH11 (FtsH protease 11) C.G. S.X.
0.02 4e-3 42 Zea mays Zm.13777.1.A1_at CK347797 - - 8e-8 At1g27435 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0046654 The chemical reactions and pathways resulting in the formation of tetrahydrofolate, 5,6,7,8-tetrahydrofolic acid, a folate derivative bearing additional hydrogens on the pterin moiety.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00280 Valine, leucine and isoleucine degradation
00290 Valine, leucine and isoleucine biosynthesis
00770 Pantothenate and CoA biosynthesis
01063 Biosynthesis of alkaloids derived from shikimate pathway
01065 Biosynthesis of alkaloids derived from histidine and purine
01100 Metabolic pathways
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