Gene omics information

Query gene ID At5g57850
Gene name aminotransferase class IV family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.7083.5At5g57850835895aminotransferase class IV family proteinF:4-amino-4-deoxychorismate lyase activity, catalytic activity;P:tetrahydrofolate biosynthetic process;C:chloroplast;BOAPFS.X.H.G.
0.5570.6At2g19940816513N-acetyl-gamma-glutamyl-phosphate reductase/ NAD or NADH binding / binding / catalytic/ oxidoreductase, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor / protein dimerizationF:in 6 functions;P:amino acid metabolic process, response to cadmium ion;C:nucleolus, chloroplast stroma, chloroplast, membrane;BOAFPS.X.H.G.
0.4558.3At5g04710830349aspartyl aminopeptidase, putativeF:aminopeptidase activity, zinc ion binding;P:proteolysis;C:chloroplast, vacuole;BOFMPAS.X.H.G.
0.4457.2At2g39080818494binding / catalyticF:binding, catalytic activity;P:metabolic process;C:chloroplast stroma, chloroplast;BOPAS.X.H.G.
0.4355.3At3g13490820551OVA5 (OVULE ABORTION 5)Encodes a dual targeted lysyl-tRNA ligase that is found both in the mitochondrion and the chloroplast. Plants mutated in this gene exhibit an ovule abortion phenotype.S.X.H.G.
0.4355.3At1g15710838140prephenate dehydrogenase family proteinF:binding, prephenate dehydrogenase (NADP+) activity, catalytic activity;P:tyrosine biosynthetic process, metabolic process;C:chloroplast;BOFPAMS.X.H.G.
0.4253.9At5g02250830864EMB2730 (EMBRYO DEFECTIVE 2730)Encodes a exoribonuclease involved in rRNA processing in mitochondria and chloroplasts.Loss of function mutations are pale green and require supplementation with sucrose for germination and early development. Plants are pale green due to defects in chloroplast biogenesis.S.X.H.G.
0.4152.4At1g80600844399WIN1 (HOPW1-1-INTERACTING 1)Encodes HopW1-1-Interacting protein 1 (WIN1). Interacts with the P. syringae effector HopW1-1. WIN1 is a putative acetylornithine transaminase. Modulates plant defenses against bacteria. Three WIN proteins are identified so far (WIN1: AT1G80600; WIN2: AT4G31750; WIN3: AT5G13320).S.X.H.G.
0.4050.8At1g19800838568TGD1 (TRIGALACTOSYLDIACYLGLYCEROL 1)Encodes a permease-Like protein involved in lipid transfer from the ER to the chloroplast, more specifically, transfer of phosphatidate across the chloroplast inner membrane. Mutant leaves accumulate trigalactosyldiacylglycerol, triacylglycerol and phosphatidate. Chloroplast lipids are altered in their fatty acid composition and as a consequence the development of chloroplasts in the mutants are impacted. The mutant seeds has a higher abortion rate.S.X.H.G.
0.4050.8At4g33480829485unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOPFS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
27.199.7GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
22.099.6GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
21.799.6GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
21.199.6GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
20.999.6GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
20.799.6GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
20.399.6GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
19.899.6GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
19.599.6GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
18.599.5GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.029e-342At5g362283771323nucleic acid binding / zinc ion bindingF:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.026e-136At2g33880817958HB-3Encodes a protein with similarity to WUS type homeodomain protein. Required for meristem growth and development and acts through positive regulation of WUS. Loss of function phenotypes include embryo lethality, hyponastic cotyledons, reduced root development and smaller meristems. Phenotypes can be rescued by addition of sucrose in the growth media.C.G.S.X.
0.012e+034At5g45720834611ATP binding / DNA binding / DNA-directed DNA polymerase/ nucleoside-triphosphatase/ nucleotide bindingF:nucleoside-triphosphatase activity, DNA binding, DNA-directed DNA polymerase activity, nucleotide binding, ATP binding;P:DNA replication;C:DNA polymerase III complex;OBMFAPVC.G.S.X.
0.012e+034At4g33945829540armadillo/beta-catenin repeat family proteinF:binding;P:biological_process unknown;C:cellular_component unknown;MPOFC.G.S.X.
0.012e+034At3g12850820467COP9 signalosome complex-related / CSN complex-relatedF:unknown;P:biological_process unknown;C:cellular_component unknown;MPOC.G.S.X.
0.012e+034At3g20360821580meprin and TRAF homology domain-containing protein / MATH domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POFMC.G.S.X.
0.012e+034At3g45720823714proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:membrane;PBMOFAC.G.S.X.
0.022e+034At2g21620816700RD2Encodes gene that is induced in response to dessication; mRNA expression is seen 10 and 24 hrs after start of dessication treatment.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.058e-136Glycine maxGma.4839.2.S1_atBI974385--4e-1At5g57850aminotransferase class IV family proteinC.G.S.X.
0.033e-446Hordeum vulgareContig24207_atContig24207--4e-4At5g57850aminotransferase class IV family proteinC.G.S.X.
0.061e-346Oryza sativaOs02g0273100AK061985.1-Aminotransferase, class IV family protein1e-3At5g57850aminotransferase class IV family proteinC.G.S.X.
0.176e-1169Populus trichocarpaPtpAffx.36616.1.S1_atCV228724hypothetical protein-4e-11At5g57850aminotransferase class IV family proteinC.G.S.X.
0.031e-138Triticum aestivumTa.27519.1.A1_atBT009181.1--3e-1At2g43130ARA4C.G.S.X.
0.023e+032Vitis vinifera1616949_atCF519047hypothetical protein LOC100250114-2e-34At5g53170FTSH11 (FtsH protease 11)C.G.S.X.
0.024e-342Zea maysZm.13777.1.A1_atCK347797--8e-8At1g27435unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0046654The chemical reactions and pathways resulting in the formation of tetrahydrofolate, 5,6,7,8-tetrahydrofolic acid, a folate derivative bearing additional hydrogens on the pterin moiety.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
00280Link to KEGG PATHWAYValine, leucine and isoleucine degradation
00290Link to KEGG PATHWAYValine, leucine and isoleucine biosynthesis
00770Link to KEGG PATHWAYPantothenate and CoA biosynthesis
01063Link to KEGG PATHWAYBiosynthesis of alkaloids derived from shikimate pathway
01065Link to KEGG PATHWAYBiosynthesis of alkaloids derived from histidine and purine
01100Link to KEGG PATHWAYMetabolic pathways
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