Gene omics information

Query gene ID At5g57760
Gene name unknown protein
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5065.3At5g57760835884unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.5065.3At5g62280836349unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.4050.8At4g34770829629auxin-responsive family proteinF:unknown;P:response to auxin stimulus;C:unknown;POS.X.H.G.
0.3338.1At3g59900825160ARGOS (AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE)Encodes ARGOS (Auxin-Regulated Gene Involved in Organ Size). Inducible by auxin. Involved in lateral organ size control. Transgenic plants expressing sense or antisense ARGOS cDNA display enlarged or reduced aerial organs, respectively. The alteration in organ size is attributable mainly to changes in cell number and the duration of organ growth.S.X.H.G.
0.1811.4At5g44260834449zinc finger (CCCH-type) family proteinF:transcription factor activity, nucleic acid binding;P:unknown;C:unknown;MOPFVS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
73.399.9GSM134309Penfield_1-11_embryo-control_Rep2_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
64.899.8GSM226272phyAphyB_Dark_replicate3GSE8951A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks
64.799.8GSM134308Penfield_1-10_embryo-control_Rep1_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
51.799.8GSM9632arf2-6_+IAA_2GSE630Auxin-mediated gene expression
50.799.8GSM9634arf2-6_+IAA_3GSE630Auxin-mediated gene expression
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.043e-238At5g37820833760NIP4F:water channel activity;P:transport;C:integral to membrane, membrane;BPMOFAVC.G.S.X.
0.014e-134At2g36490818224DML1 (DEMETER-LIKE 1)A repressor of transcriptional gene silencing. Functions by demethylating the target promoter DNA. Interacts physically with RPA2/ROR1. In the ros1 mutants, an increase in methylation is observed in a number of gene promoters. Among the loci affected by ros1, a few (RD29A and At1g76930) are affected in cytosine methylation in all sequence contexts (CpG, CpNpG or CpNpN), although many others are affected primarily in non-CpG contexts.C.G.S.X.
0.034e-134At2g42080818808DNAJ heat shock N-terminal domain-containing proteinF:heat shock protein binding;P:protein folding;C:chloroplast;OMBPFC.G.S.X.
0.022e+032At4g15640827241unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PC.G.S.X.
0.032e+032At4g01265828082raffinose synthase family protein / seed imbibition protein-relatedPseudogene of AT4G01265; raffinose synthase family proteinC.G.S.X.
0.022e+032At4g00290828077mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing proteinF:unknown;P:unknown;C:chloroplast, membrane, chloroplast envelope;BOAPMFC.G.S.X.
0.032e+032At3g58020824971heat shock protein bindingF:heat shock protein binding;P:protein folding;C:nucleus;MPOBFAC.G.S.X.
0.022e+032At3g50140824176unknown proteinF:unknown;P:biological_process unknown;C:chloroplast;MPOFVBAC.G.S.X.
0.022e+032At2g16940816197RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:mRNA processing;C:nucleus;MOFPBVAC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.032e+032Glycine maxPsAffx.CL2440Contig1_atPsAffx.CL2440Contig1--1e+0At5g54165unknown proteinC.G.S.X.
0.043e+030Hordeum vulgareContig8352_atContig8352--3e-1At1g11900pentatricopeptide (PPR) repeat-containing proteinC.G.S.X.
0.032e-136Oryza sativaOs03g0322600AK067222.1-Hypothetical protein4e-2At5g22340unknown proteinC.G.S.X.
0.056e-134Populus trichocarpaPtpAffx.208819.1.S1_atpmrna17487hypothetical protein-8e-1At5g57760unknown proteinC.G.S.X.
0.052e+032Triticum aestivumTaAffx.53763.1.S1_atCA689383--2e-5At1g73030VPS46.2C.G.S.X.
0.055e-132Vitis vinifera1610622_atCD799955hypothetical protein LOC100244354-2e-1At4g19150ankyrin repeat family proteinC.G.S.X.
0.023e+030Zea maysZm.13346.2.S1_s_atCD440340--1e-165At4g14960TUA6C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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