Gene omics information

Query gene ID At5g57740
Gene name XBAT32
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.114.1At5g57740835882XBAT32ubiquitin ligaseS.X.H.G.
0.6781.6At4g26470828753calcium ion bindingF:calcium ion binding;P:N-terminal protein myristoylation;C:cellular_component unknown;MPOFBS.X.H.G.
0.5065.3At2g46140819221late embryogenesis abundant protein, putative / LEA protein, putativeF:molecular_function unknown;P:embryonic development ending in seed dormancy, response to desiccation;C:plasma membrane;PBOS.X.H.G.
0.2217.5At1g65840842894ATPAO4 (ARABIDOPSIS THALIANA POLYAMINE OXIDASE 4)encodes a peroxisomal polyamine oxidase, involved in the back-conversion polyamine degradation pathway. Among the five polyamine oxidases in the Arabidopsis genome, PAO4 is the major isoform in root peroxisomes.S.X.H.G.
0.103.4At2g42490818849copper amine oxidase, putativeF:quinone binding, amine oxidase activity, copper ion binding;P:cellular amine metabolic process;C:unknown;FBMOPAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
159.099.9GSM284392Arabidopsis GCE1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
77.999.9GSM284393Arabidopsis GCE2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
69.799.9GSM311280Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
68.799.9GSM284394Arabidopsis GCE3GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
65.199.8GSM311292Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
63.599.8GSM311291Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
39.999.8GSM142736DH001_ATH1_A3-TCP1GSE6162Transcriptome analysis of Arabidopsis microgametogenesis
39.499.8GSM311279Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
32.899.7GSM142739DH001_ATH1_A6-TCP2GSE6162Transcriptome analysis of Arabidopsis microgametogenesis
28.799.7GSM265423Arabidopsis, root, longitudinal zone 3, standard conditions, rep 2GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.011e-242At5g17970831664disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;POBMFAVC.G.S.X.
0.011e-242At4g16990827407RLM3 (RESISTANCE TO LEPTOSPHAERIA MACULANS 3)F:transmembrane receptor activity, ATP binding;P:defense response to fungus, incompatible interaction, jasmonic acid and ethylene-dependent systemic resistance, callose deposition during defense response, defense response;C:intrinsic to membrane;PMBC.G.S.X.
0.015e-240At5g18360831954disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, chloroplast;PMBOFAVC.G.S.X.
0.025e-240At1g75520843888SRS5 (SHI-RELATED SEQUENCE 5)A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis.C.G.S.X.
0.012e-138At5g56890835791protein kinase family proteinF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOFBVAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.135e-963Glycine maxGmaAffx.92906.1.S1_atCF808631--2e-9At5g57740XBAT32C.G.S.X.
0.079e-238Hordeum vulgareContig17859_atContig17859--1e-1At5g57740XBAT32C.G.S.X.
0.122e-965Oryza sativaOs02g0791200AK120632.1-Zn-finger, RING domain containing protein1e-9At5g57740XBAT32C.G.S.X.
0.023e-138Populus trichocarpaPtp.168.1.A1_atCK089144hypothetical protein-4e-1At5g50090unknown proteinC.G.S.X.
0.023e+034Triticum aestivumTaAffx.59320.1.S1_atCA603404--4e+0At4g37483unknown proteinC.G.S.X.
0.026e-238Vitis vinifera1611415_atAY427153.1--3e-4At4g16990RLM3 (RESISTANCE TO LEPTOSPHAERIA MACULANS 3)C.G.S.X.
0.025e+032Zea maysZm.4883.1.S1_atAI782987hypothetical protein LOC100216906-4e-3At2g37650scarecrow-like transcription factor 9 (SCL9)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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