CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g57620

Gene name MYB36 (myb domain protein 36)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g57620 835866 MYB36 (myb domain protein 36) Encodes a putative transcription factor (MYB36). S.X. H.G.
1.00 100.0 At2g39430 818528 disease resistance-responsive protein-related / dirigent protein-related F:molecular_function unknown;P:lignan biosynthetic process;C:endomembrane system;PABFO S.X. H.G.
1.00 100.0 At5g06200 830507 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.98 97.8 At1g71740 843504 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.98 97.8 At2g27370 817280 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.98 97.8 At2g32300 817791 UCC1 (UCLACYANIN 1) Encodes a uclacyanin, a protein precursor that is closely related to precursors of stellacyanins and a blue copper protein from pea pods. S.X. H.G.
0.98 97.8 At3g11550 820328 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.95 97.0 At1g61590 842455 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;MPOBFVA S.X. H.G.
0.95 97.0 At4g20140 827760 GSO1 (GASSHO1) Encodes GASSHO1 (GSO1), a putative leucine-rich repeat transmembrane-type receptor kinase. GSO1 and a homolog GSO2 (At5g44700) are required for the formation of a normal epidermal surface during embryogenesis. S.X. H.G.
0.95 97.0 At4g21340 827884 B70 F:transcription factor activity;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus, intracellular;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
402.4 100.0 GSM184900 Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
386.1 100.0 GSM184918 Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
279.7 100.0 GSM133993 Birnbaum_1-26_J0571-2_Rep2_ATH1 GSE5749 A gene expression map of the Arabidopsis root
224.5 100.0 GSM184899 Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
220.5 100.0 GSM184898 Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
218.8 100.0 GSM266672 Arabidopsis, root cells, endodermis and quiescent center, -Fe, replicate 1 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
213.0 100.0 GSM184917 Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
207.5 100.0 GSM266674 Arabidopsis, root cells, endodermis and quiescent center, -Fe, replicate 3 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
146.9 99.9 GSM266673 Arabidopsis, root cells, endodermis and quiescent center, -Fe, replicate 2 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
135.7 99.9 GSM133971 Birnbaum_1-1_src5-1_Rep1_ATH1 GSE5749 A gene expression map of the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.27 7e-34 145 At5g65790 836708 MYB68 (MYB DOMAIN PROTEIN 68) Encodes a putative MYB transcription factor. C.G. S.X.
0.20 7e-31 135 At3g49690 824131 MYB84 (MYB DOMAIN PROTEIN 84) "Putative homolog of the Blind gene in tomato. Together with RAX1 and RAX3 belong to the class R2R3 MYB genes; encoded by the Myb-like transcription factor MYB84, regulates axillary meristem formation. " C.G. S.X.
0.28 7e-28 125 At2g36890 818262 RAX2 (REGULATOR OF AXILLARY MERISTEMS 2) "Putative homolog of the Blind gene in tomato. Together with RAX1 and RAX3 belong to the class R2R3 MYB genes; encoded by the Myb-like transcription factor MYB38, regulates axillary meristem formation. " C.G. S.X.
0.22 1e-20 101 At5g23000 832364 MYB37 (MYB DOMAIN PROTEIN 37) "Putative homolog of the Blind gene in tomato. Together with RAX2 and RAX3 belong to the class R2R3 MYB genes; encoded by the Myb-like transcription factor MYB37, regulates axillary meristem formation. RAX1 is expressed in a small central domain within the boundary zone separating SAM and leaf primordia during early leaf primordium development and is currently the earliest spatial marker for future axillary meristems. Member of the R2R3 factor gene family." C.G. S.X.
0.09 2e-9 63 At5g60890 836210 MYB34 (MYB DOMAIN PROTEIN 34) Myb-like transcription factor that modulates expression of ASA1, a key point of control in the tryptophan pathway; mutant has deregulated expression of ASA1 in dominant allele. Loss of function allele suggests ATR1 also functions at a control point for regulating indole glucosinolate homeostasis. C.G. S.X.
0.06 2e-6 54 At1g18960 838477 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent, regulation of transcription;C:unknown;POMFV C.G. S.X.
0.05 8e-6 52 At3g02940 821178 MYB107 (myb domain protein 107) Encodes a putative transcription factor (MYB107). C.G. S.X.
0.05 3e-5 50 At3g27920 822415 ATMYB0 (MYB DOMAIN PROTEIN 0) Encodes a Myb-like protein that is required for induction of trichome development. C.G. S.X.
0.09 3e-5 50 At3g28470 822477 TDF1 (DEFECTIVE IN MERISTEM DEVELOPMENT AND FUNCTION 1) Member of the R2R3 factor gene family. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.33 2e-44 180 Glycine max GmaAffx.26767.2.S1_at BE352658 MYB transcription factor MYB71 - 4e-45 At5g57620 MYB36 (myb domain protein 36) C.G. S.X.
0.03 1e+0 34 Hordeum vulgare Contig9996_at Contig9996 - - 1e+0 At3g18460 unknown protein C.G. S.X.
0.21 8e-23 109 Oryza sativa Os08g0248700 AK111788.1 - Myb, DNA-binding domain containing protein 5e-23 At5g57620 MYB36 (myb domain protein 36) C.G. S.X.
0.39 1e-26 121 Populus trichocarpa PtpAffx.202002.1.S1_at pmrna3994 hypothetical protein - 5e-27 At5g57620 MYB36 (myb domain protein 36) C.G. S.X.
0.14 4e-11 69 Triticum aestivum TaAffx.62939.1.S1_at CA728684 - - 3e-10 At4g37780 MYB87 (MYB DOMAIN PROTEIN 87) C.G. S.X.
0.06 2e-3 42 Vitis vinifera 1614953_at CF519173 R2R3 Myb30 transcription factor - 4e-33 At3g47600 ATMYB94 (MYB DOMAIN PROTEIN 94) C.G. S.X.
0.05 1e-2 40 Zea mays Zm.13899.1.S1_at AF099383.1 R2R3MYB-domain protein - 6e-2 At4g37780 MYB87 (MYB DOMAIN PROTEIN 87) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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