Gene omics information

Query gene ID At5g57590
Gene name BIO1 (biotin auxotroph 1)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4253.9At5g57590835863BIO1 (biotin auxotroph 1)Mutant complemented by E coli Bio A gene encoding 7,8-diaminopelargonic acid aminotransferase.S.X.H.G.
0.8391.4At1g15570838127CYCA2A2-type cyclin. Negatively regulates endocycles and acts as a key regulator of ploidy levels in Arabidopsis endoreduplication. Interacts physically with CDKA;1. Expressed preferentially in trichomes and young developing tissues.S.X.H.G.
0.6176.7At5g43080834324CYCA3F:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:nucleus;MPOFVS.X.H.G.
0.6075.7At5g08020830696RPA70B (RPA70-KDA SUBUNIT B)Encodes a homolog of Replication Protein A. rpa70b mutants are hypersensitive to UV-B radiation and MMS treatments suggesting a role for this protein in DNA damage repair.S.X.H.G.
0.5570.6At3g24495822040MSH7 (MUTS HOMOLOG 7)encodes a DNA mismatch repair homolog of human MutS gene, MSH6. There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2*MSH7 exhibit moderate affinity for a (T/G) substrate and weak binding of (+T), suggesting MSH2*MSH7 may be specialized for lesions/base mispairs not tested or for (T/G) mispairs in special contexts.S.X.H.G.
0.4761.2At3g18524821383MSH2 (MUTS HOMOLOG 2)Encodes a DNA mismatch repair homolog of human MutS gene, MSH6. MSH2 is involved in maintaining genome stability and repressing recombination of mismatched heteroduplexes.There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2 has different binding specificity to different mismatches in combination with MSH3, MSH6, or MSH7.S.X.H.G.
0.4050.8At4g24790828581ATP binding / DNA binding / DNA-directed DNA polymeraseF:DNA binding, DNA-directed DNA polymerase activity, ATP binding;P:DNA replication;C:DNA polymerase III complex;BOFMAPVS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
66.399.8GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
41.799.8GSM131108Broadley_1-6_A6-Bo+P3-nutrient-replete_Rep3_ATH1GSE5614Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)
37.699.7GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
35.999.7GSM184151ATR1_OE_rep2GSE7570ATR1_like_Clade_OE_and_miR
32.999.7GSM131106Broadley_1-4_A4-Bo-P3-phosphate-starved_Rep3_ATH1GSE5614Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)
31.799.7GSM131105Broadley_1-3_A3-Bo-P2-phosphate-starved_Rep2_ATH1GSE5614Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)
28.699.7GSM317619Apex_14DAS_1GSE12676Arabidopsis thaliana Ler developmental series
28.399.7GSM131104Broadley_1-2_A2-Bo-P-phosphate-starved_Rep1_ATH1GSE5614Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)
23.799.6GSM183516MYB51_OE_rep1GSE7570ATR1_like_Clade_OE_and_miR
20.299.6GSM131103Broadley_1-1_A1-Bo+P-nutrient-replete_Rep1_ATH1GSE5614Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.018e-240At5g64200836541ATSC35encodes an SC35-like splicing factor of 35 kD localized to the nuclear specks.C.G.S.X.
0.013e-138At5g07400830631forkhead-associated domain-containing protein / FHA domain-containing proteinF:hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, phosphoric diester hydrolase activity, zinc ion binding, nucleic acid binding;P:DNA repair;C:nucleus;MFOPBC.G.S.X.
0.011e+036At4g36210829778unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FMOBPAC.G.S.X.
0.011e+036At4g291208290336-phosphogluconate dehydrogenase NAD-binding domain-containing proteinF:coenzyme binding, oxidoreductase activity, phosphogluconate dehydrogenase (decarboxylating) activity, binding, catalytic activity;P:pentose-phosphate shunt, metabolic process;C:unknown;BOMFPAVC.G.S.X.
0.011e+036At3g48730824034GSA2 (glutamate-1-semialdehyde 2,1-aminomutase 2)F:glutamate-1-semialdehyde 2,1-aminomutase activity, pyridoxal phosphate binding, transaminase activity, catalytic activity;P:porphyrin biosynthetic process;C:chloroplast stroma, chloroplast, chloroplast envelope;BOFMAPVC.G.S.X.
0.011e+036At2g26290817169ARSK1 (root-specific kinase 1)F:kinase activity;P:response to salt stress, response to water deprivation, response to abscisic acid stimulus;C:unknown;MPOBFVAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.012e+036Glycine maxPsAffx.C21000053_atPsAffx.C21000053--1e+0At5g57590BIO1 (biotin auxotroph 1)C.G.S.X.
0.061e-861Hordeum vulgareContig12961_atContig12961--1e-8At5g57590BIO1 (biotin auxotroph 1)C.G.S.X.
0.101e-554Oryza sativaOs08g0245400AK100945.1-Aminotransferase class-III family protein6e-6At5g57590BIO1 (biotin auxotroph 1)C.G.S.X.
0.195e-1687Populus trichocarpaPtpAffx.217589.1.S1_atpmrna32921hypothetical protein-2e-16At5g57590BIO1 (biotin auxotroph 1)C.G.S.X.
0.015e+034Triticum aestivumTaAffx.85834.1.S1_atCA619179--2e-2At1g04778unknown proteinC.G.S.X.
0.014e-136Vitis vinifera1620953_atCB835898--1e-49Atmg00110-C.G.S.X.
0.031e-448Zea maysZm.13529.1.S1_atAY108369.1--1e-4At5g57590BIO1 (biotin auxotroph 1)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009102The chemical reactions and pathways resulting in the formation of biotin, cis-tetrahydro-2-oxothieno(3,4-d)imidazoline-4-valeric acid.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00027Link to KaPPA-View 4Biotin biosynthesis



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
00780Link to KEGG PATHWAYBiotin metabolism
01100Link to KEGG PATHWAYMetabolic pathways
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