Gene omics information

Query gene ID At5g57560
Gene name TCH4 (Touch 4)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.8994.6At5g57560835860TCH4 (Touch 4)Encodes a cell wall-modifying enzyme, rapidly upregulated in response to environmental stimuliS.X.H.G.
1.00100.0At1g21910838793AP2 domain-containing transcription factor family proteinencodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.S.X.H.G.
1.00100.0At1g35140840399PHI-1 (PHOSPHATE-INDUCED 1)At1g35140 (At1g35140/T32G9_32) mRNA, complete cdsS.X.H.G.
1.00100.0At1g77640844099AP2 domain-containing transcription factor, putativeencodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.S.X.H.G.
1.00100.0At4g08950826473EXO (EXORDIUM)F:molecular_function unknown;P:response to brassinosteroid stimulus;C:cell wall, plant-type cell wall;PBS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
50.299.8E-MEXP-807-raw-cel-1173273223
48.499.8E-MEXP-807-raw-cel-1173273144
45.699.8E-MEXP-807-raw-cel-1173273060
44.999.8E-MEXP-807-raw-cel-1173273088
38.099.8E-MEXP-807-raw-cel-1173273252
32.899.7GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
31.499.7E-MEXP-807-raw-cel-1173273196
29.899.7E-MEXP-807-raw-cel-1173273116
24.699.6E-MEXP-807-raw-cel-1173273170
21.399.6E-MEXP-807-raw-cel-1173272948
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.702e-92339At4g25810828686XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6)xyloglucan endotransglycosylase-related protein (XTR6)C.G.S.X.
0.515e-50198At4g30270829150MERI5B (meristem-5)encodes a protein similar to endo xyloglucan transferase in sequence. It is also very similar to BRU1 in soybean, which is involved in brassinosteroid response.C.G.S.X.
0.169e-24111At3g23730821955xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeF:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, cell wall, apoplast;PFBOC.G.S.X.
0.303e-23109At4g30290829152XTH19 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 19)putative xyloglucan endotransglycosylase/hydrolase, expressed throughout both the main and the lateral root, with intensive expression at the dividing and elongating regions. Is expressed in lateral root primordia but expression ceases after lateral root begins to grow.C.G.S.X.
0.205e-1995At2g18800816395XTH21 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 21)F:hydrolase activity, acting on glycosyl bonds, xyloglucan endotransglucosylase activity;P:primary root development, cell wall modification;C:endomembrane system, apoplast, cell wall;PFBOC.G.S.X.
0.323e-1789At5g48070834859XTH20 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 20)putative xyloglucan endotransglycosylase/hydrolase, expressed primarily in the stele of mature non-elongating regions of both the main and the lateral root. Is expressed in lateral root primordia but expression ceases after lateral root begins to grow.C.G.S.X.
0.208e-1271At4g30280829151XTH18 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 18)putative xyloglucan endotransglycosylase/hydrolase, expressed in the mature or basal regions of both the main and lateral roots, but not in the tip of these roots where cell division occurs.C.G.S.X.
0.331e-1067At5g57550835859XTR3 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 3)xyloglucan endotransglycosylase-related protein (XTR3)C.G.S.X.
0.262e-963At1g65310842839XTH17 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 17)putative xyloglucan endotransglycosylase/hydrolase, expressed in the mature or basal regions of both the main and lateral roots, but not in the tip of these roots where cell division occurs.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.236e-756Glycine maxGma.117.1.S1_atAB083025.1syringolide-induced protein 19-1-5-2e-13At4g25810XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6)C.G.S.X.
0.075e-238Hordeum vulgareContig2673_atContig2673--1e-17At4g25820XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9)C.G.S.X.
0.033e-344Oryza sativaOs06g0696600AK105934.1-Xyloglucan endo-transglycosylase homolog9e-3At4g25810XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6)C.G.S.X.
0.398e-22105Populus trichocarpaPtp.3948.1.S1_atDN488621hypothetical protein-1e-38At4g25810XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6)C.G.S.X.
0.052e-344Triticum aestivumTa.28766.2.S1_s_atCD492036--2e-13At4g25820XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9)C.G.S.X.
0.091e-446Vitis vinifera1618150_atCF372200hypothetical LOC100261619-9e-4At4g25810XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6)C.G.S.X.
0.042e-136Zea maysZm.5108.1.A1_atAI600869xyloglucan endotransglucosylase/hydrolase protein 23-1e-3At5g57550XTR3 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 3)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009408A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism.
XGO:0009409A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
XGO:0009612A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mechanical stimulus.
XGO:0009733A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus.
XGO:0009741A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a brassinosteroid stimulus.
SGO:0009664A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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