Gene omics information

Query gene ID At5g57540
Gene name xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g57540835858xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeF:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PFBOS.X.H.G.
0.9998.1At1g54970841938ATPRP1 (PROLINE-RICH PROTEIN 1)encodes a proline-rich protein that is specifically expressed in the root.S.X.H.G.
0.9998.1At2g20520816574FLA6 (FASCICLIN-LIKE ARABINOGALACTAN 6)fasciclin-like arabinogalactan-protein 6 (Fla6)S.X.H.G.
0.9998.1At5g57530835857xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeF:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:cell wall, cytoplasm;PFBOS.X.H.G.
0.9797.6At1g34510840353peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOS.X.H.G.
0.9797.6At5g22410832302peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOS.X.H.G.
0.9597.0At5g19800832100hydroxyproline-rich glycoprotein family proteinF:unknown;P:biological_process unknown;C:endomembrane system;MPOFBVAS.X.H.G.
0.9496.7At4g25790828684allergen V5/Tpx-1-related family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOBVAS.X.H.G.
0.9396.4At5g35190833473proline-rich extensin-like family proteinF:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVAS.X.H.G.
0.9296.0At4g40090830172AGP3 (arabinogalactan-protein 3)F:unknown;P:multicellular organismal development;C:endomembrane system;PS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
545.9100.0GSM142750MJ001_ATH1_A1-jones-WT1GSE6165The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
485.8100.0GSM142751MJ001_ATH1_A2-jones-WT2GSE6165The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
251.3100.0GSM142754MJ001_ATH1_A5-jones-WT-Rep3GSE6165The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
107.899.9GSM184837Arabidopsis, root, longitudinal zone 4, standard conditions, replicate 7GSE7639Expression analysis of root developmental zones after treatment with salt
91.899.9GSM226538L8SBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
77.899.9E-MEXP-1304-raw-cel-1530617900
77.799.9GSM109115vte2-1(Col-0) 1 day, biological rep3GSE4847Expression data from tocopherol deficient seedlings of Arabidopsis
75.399.9E-MEXP-722-raw-cel-1062243470
63.999.8GSM133258RIKEN-GODA13B-6GSE5696AtGenExpress: Effect of brassinosteroids in seedlings
57.399.8GSM133268RIKEN-GODA5B-6GSE5696AtGenExpress: Effect of brassinosteroids in seedlings
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.900975At5g57530835857xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeF:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:cell wall, cytoplasm;PFBOC.G.S.X.
0.568e-92337At4g25820828687XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9)Encodes a xyloglucan endotransglycosylase with a clear preference for non-fucosylated xyloglucan polymer.C.G.S.X.
0.242e-1583At5g57550835859XTR3 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 3)xyloglucan endotransglycosylase-related protein (XTR3)C.G.S.X.
0.108e-1581At4g14130827051XTR7 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7)xyloglucan endotransglycosylase-related protein (XTR7)C.G.S.X.
0.182e-1273At3g23730821955xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeF:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, cell wall, apoplast;PFBOC.G.S.X.
0.201e-1067At4g25810828686XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6)xyloglucan endotransglycosylase-related protein (XTR6)C.G.S.X.
0.121e-757At5g57560835860TCH4 (Touch 4)Encodes a cell wall-modifying enzyme, rapidly upregulated in response to environmental stimuliC.G.S.X.
0.091e-448At4g30270829150MERI5B (meristem-5)encodes a protein similar to endo xyloglucan transferase in sequence. It is also very similar to BRU1 in soybean, which is involved in brassinosteroid response.C.G.S.X.
0.037e-342At1g65310842839XTH17 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 17)putative xyloglucan endotransglycosylase/hydrolase, expressed in the mature or basal regions of both the main and lateral roots, but not in the tip of these roots where cell division occurs.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.166e-756Glycine maxGma.4027.1.S1_atBQ629007--3e-12At4g30270MERI5B (meristem-5)C.G.S.X.
0.065e-238Hordeum vulgareContig2672_atContig2672xyloglucan xyloglucosyl transferase-2e-3At4g25810XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6)C.G.S.X.
0.081e-242Oryza sativaOs06g06965009634.m04702-Xyloglucan endo-transglycosylase precursor7e-3At5g57540xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeC.G.S.X.
0.202e-654Populus trichocarpaPtp.7376.1.S1_a_atCV233936hypothetical protein-6e-7At4g30270MERI5B (meristem-5)C.G.S.X.
0.065e-446Triticum aestivumTa.13337.2.S1_x_atCA680143--6e-4At5g57540xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeC.G.S.X.
0.053e-238Vitis vinifera1608945_atBQ793580hypothetical protein LOC100263523-5e-32At4g14130XTR7 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7)C.G.S.X.
0.052e-136Zea maysZm.8890.1.S1_a_atBM379881hypothetical protein LOC100191584-1e-8At4g25820XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0005975The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
LGO:0006073The chemical reactions and pathways involving glucans, polysaccharides consisting only of glucose residues.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00412Link to KaPPA-View 4Glycoside Hydrolase
00437Link to KaPPA-View 4Xyloglucan biosynthesis and modification



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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