CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g57440

Gene name GS1

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g57440 835849 GS1 a member of haloacid dehalogenase-like hydrolase family S.X. H.G.
0.40 50.8 At1g79500 844288 2-dehydro-3-deoxyphosphooctonate aldolase / phospho-2-dehydro-3-deoxyoctonate aldolase / 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase (KDSA) Encodes a protein with 3-deoxy-8-phosphooctulonate synthase (KDOP synthase) activity which is involved in the biosynthesis of KDO, a component of cell wall rhamnogalacturonan II. S.X. H.G.
0.37 45.0 At5g16870 831550 aminoacyl-tRNA hydrolase F:aminoacyl-tRNA hydrolase activity;P:translation;C:unknown;OAMFPVB S.X. H.G.
0.36 43.6 At1g09150 837434 pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein F:RNA binding;P:biological_process unknown;C:cellular_component unknown;MOFAP S.X. H.G.
0.35 41.6 At5g58240 835936 bis(5'-adenosyl)-triphosphatase, putative Encodes a Fhit protein. Has nucleoside phosphoramidase and adenylylsulfatase activities. S.X. H.G.
0.33 38.1 At1g09660 837494 KH domain-containing quaking protein, putative F:RNA binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFO S.X. H.G.
0.33 38.1 At1g27450 839636 APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1) Adenosine phosphoribosyl transferase(E.C:2.4.2.7), involved in the one-step salvage of adenine to AMP. S.X. H.G.
0.33 38.1 At5g17070 831570 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO S.X. H.G.
0.32 35.7 At3g25040 822095 ER lumen protein retaining receptor, putative / HDEL receptor, putative F:ER retention sequence binding, receptor activity;P:protein retention in ER lumen, protein transport;C:endomembrane system, integral to membrane;MOFP S.X. H.G.
0.31 33.8 At3g03220 821224 ATEXPA13 (ARABIDOPSIS THALIANA EXPANSIN A13) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
26.6 99.7 GSM284391 Arabidopsis GPE3 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
25.2 99.6 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
20.0 99.6 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
18.7 99.5 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
18.6 99.5 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
17.2 99.5 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
16.8 99.5 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
16.3 99.5 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
16.2 99.5 GSM284384 Arabidopsis GEP5 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
16.1 99.5 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.61 1e-102 373 At4g25840 828690 GPP1 (glycerol-3-phosphatase 1) F:hydrolase activity, catalytic activity;P:metabolic process;C:chloroplast;BOMFPA C.G. S.X.
0.02 4e-1 36 At2g18630 816378 unknown protein F:unknown;P:N-terminal protein myristoylation;C:plasma membrane, peroxisome, cytoplasm;PMOB C.G. S.X.
0.01 1e+0 34 At5g10180 830882 AST68 Encodes a low-affinity sulfate transporter expressed in the root cap and central cylinder, where it is induced by sulfur starvation. Expression in the shoot vascular system is not induced by sulfur starvation. C.G. S.X.
0.02 1e+0 34 At3g05700 819739 - F:unknown;P:response to water deprivation;C:unknown;PMO C.G. S.X.
0.02 1e+0 34 At1g11840 837731 ATGLX1 (GLYOXALASE I HOMOLOG) Encodes a glyoxalase I homolog ATGLX1. C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.24 1e-23 111 Glycine max Gma.3125.1.S1_at CD392634 - - 8e-16 At5g57440 GS1 C.G. S.X.
0.07 4e-2 38 Hordeum vulgare Contig8827_at Contig8827 - - 6e-10 At4g25840 GPP1 (glycerol-3-phosphatase 1) C.G. S.X.
0.02 2e-1 38 Oryza sativa Os08g0243600 AB110183.1 - Haloacid dehalogenase-like hydrolase domaincontaining protein 4e-11 At4g25840 GPP1 (glycerol-3-phosphatase 1) C.G. S.X.
0.32 7e-34 145 Populus trichocarpa PtpAffx.45742.1.A1_at CV258083 hypothetical protein - 3e-24 At4g25840 GPP1 (glycerol-3-phosphatase 1) C.G. S.X.
0.04 9e-2 38 Triticum aestivum Ta.6535.2.S1_a_at BJ276512 - - 3e-10 At4g25840 GPP1 (glycerol-3-phosphatase 1) C.G. S.X.
0.42 4e-41 167 Vitis vinifera 1618644_at CD005517 - - 1e-40 At5g57440 GS1 C.G. S.X.
0.03 2e-3 42 Zea mays Zm.5228.1.A1_at AW061845 hypothetical protein LOC100278989 - 3e+0 At4g25840 GPP1 (glycerol-3-phosphatase 1) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage