CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g57280

Gene name methyltransferase

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.61 76.7 At5g57280 835833 methyltransferase F:methyltransferase activity;P:metabolic process;C:unknown;BOMFPA S.X. H.G.
0.77 88.0 At3g18600 821391 DEAD/DEAH box helicase, putative F:helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding;P:unknown;C:nucleolus;BOMFPAV S.X. H.G.
0.72 84.8 At3g11964 820370 RNA binding F:RNA binding;P:mRNA processing, RNA processing;C:nucleolus, plasma membrane;BOMFPA S.X. H.G.
0.69 82.9 At3g09720 820129 DEAD/DEAH box helicase, putative F:helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding;P:unknown;C:cellular_component unknown;BOMFPAV S.X. H.G.
0.65 79.6 At2g40700 818665 DEAD/DEAH box helicase, putative (RH17) F:helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding;P:unknown;C:unknown;BOMFPAV S.X. H.G.
0.63 78.1 At4g32720 829408 AtLa1 (Arabidopsis thaliana La protein 1) Encodes AtLa1, a member of the highly abundant phosphoprotein La proteins. Predominantly localized to the nucleoplasm and was also detected in the nucleolar cavity. Has RNA binding activity. Required for normal ribosome biogenesis and embryogenesis. S.X. H.G.
0.61 76.7 At4g28450 828962 nucleotide binding / protein binding This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase S.X. H.G.
0.61 76.7 At3g21540 821708 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:rRNA processing;C:nucleolus, heterotrimeric G-protein complex;MFOPBA S.X. H.G.
0.60 75.7 At4g04940 825833 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:rRNA processing;C:CUL4 RING ubiquitin ligase complex;MFBOPA S.X. H.G.
0.57 73.8 At5g61770 836299 PPAN (PETER PAN-LIKE PROTEIN) F:unknown;P:unknown;C:cellular_component unknown;MOFPVB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
28.5 99.7 GSM265419 Arabidopsis, root, longitudinal zone 1, standard conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
26.5 99.7 GSM265426 Arabidopsis, root, longitudinal zone 1, -Fe conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
25.1 99.6 GSM265427 Arabidopsis, root, longitudinal zone 1, -Fe conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
23.6 99.6 GSM133758 Lindsey_1-11_heart-stage-root_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
23.0 99.6 GSM133975 Birnbaum_1-5_StageI-2_Rep2_ATH1 GSE5749 A gene expression map of the Arabidopsis root
22.7 99.6 GSM133974 Birnbaum_1-4_StageI-1_Rep1_ATH1 GSE5749 A gene expression map of the Arabidopsis root
21.7 99.6 GSM133976 Birnbaum_1-6_StageI-3_Rep3_ATH1 GSE5749 A gene expression map of the Arabidopsis root
20.2 99.6 GSM265418 Arabidopsis, root, longitudinal zone 1, standard conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
18.2 99.5 GSM133977 Birnbaum_1-7_StageI-4_Rep4_ATH1 GSE5749 A gene expression map of the Arabidopsis root
17.7 99.5 E-MEXP-849-raw-cel-1181981022
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 2e-3 44 At2g42160 818816 zinc finger (ubiquitin-hydrolase) domain-containing protein F:protein binding, catalytic activity, zinc ion binding;P:unknown;C:unknown;MFOPB C.G. S.X.
0.01 1e-1 38 At3g05270 819691 - F:unknown;P:unknown;C:unknown;MOBFPAV C.G. S.X.
0.02 1e-1 38 At1g26960 839587 AtHB23 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 23) Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. C.G. S.X.
0.01 4e-1 36 At5g20350 832157 TIP1 (TIP GROWTH DEFECTIVE 1) Encodes a protein containing ankyrin and DHHC-CRD domain. Acts to restrict the size of the swelling that forms at the beginning of root hair cell growth, possibly by a mechanism that requires RHD1. Mutant displays defects in both root hair and pollen tube growth. C.G. S.X.
0.01 4e-1 36 At5g08450 830744 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA C.G. S.X.
0.01 4e-1 36 At3g16840 820937 ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding F:helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity;P:biological_process unknown;C:cellular_component unknown;MOBFPAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.42 6e-38 159 Glycine max GmaAffx.8973.1.S1_at BI315806 - - 4e-38 At5g57280 methyltransferase C.G. S.X.
0.08 2e-11 69 Hordeum vulgare Contig11647_at Contig11647 - - 4e-11 At5g57280 methyltransferase C.G. S.X.
0.18 2e-14 81 Oryza sativa Os02g0804300 AK067584.1 - SAM (and some other nucleotide) binding motifdomain containing protein 1e-14 At5g57280 methyltransferase C.G. S.X.
0.29 4e-45 182 Populus trichocarpa Ptp.537.1.S1_at BU836563 hypothetical protein - 4e-45 At5g57280 methyltransferase C.G. S.X.
0.09 8e-12 71 Triticum aestivum Ta.13801.1.S1_at BJ242611 - - 1e-11 At5g57280 methyltransferase C.G. S.X.
0.03 5e-1 34 Vitis vinifera 1619659_s_at CF405842 pectate lyase PL1-like - 2e-1 At4g26230 60S ribosomal protein L31 (RPL31B) C.G. S.X.
0.11 3e-6 52 Zea mays Zm.1403.1.S1_at BE012190 hypothetical protein LOC100194268 - 1e-5 At5g57280 methyltransferase C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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