Gene omics information

Query gene ID At5g57240
Gene name ORP4C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4C)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g57240835830ORP4C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4C)F:oxysterol binding;P:steroid metabolic process;C:cellular_component unknown;MFOPS.X.H.G.
1.00100.0At5g44440834471FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAMS.X.H.G.
0.8693.1At4g14130827051XTR7 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7)xyloglucan endotransglycosylase-related protein (XTR7)S.X.H.G.
0.8693.1At5g54190835507PORAlight-dependent NADPH:protochlorophyllide oxidoreductase AS.X.H.G.
0.6176.7At4g35720829724unknown proteinF:unknown;P:unknown;C:unknown;POS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
155.799.9GSM284387Arabidopsis GSUS4bGSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
121.299.9E-NASC-78-raw-cel-1463195219
120.499.9GSM226272phyAphyB_Dark_replicate3GSE8951A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks
105.899.9GSM226268WT(Ler)_Dark_replicate2GSE8951A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks
95.999.9E-NASC-78-raw-cel-1463195267
83.299.9GSM282699Col_BRZ_rep3GSE11216Brassinazole treatment of arf2 and wild-type dark-grown seedlings
72.799.9GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
71.099.9E-NASC-78-raw-cel-1463195235
70.399.9GSM282698Col_BRZ_rep2GSE11216Brassinazole treatment of arf2 and wild-type dark-grown seedlings
66.399.8E-NASC-78-raw-cel-1463195187
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.632e-65250At4g25850828691ORP4B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4B)F:oxysterol binding;P:steroid metabolic process;C:cellular_component unknown;MFOPC.G.S.X.
0.644e-36153At4g25860828692ORP4A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4A)F:oxysterol binding;P:steroid metabolic process;C:cellular_component unknown;MFOPC.G.S.X.
0.011e-138At5g60690836190REV (REVOLUTA)REVOLUTA regulates meristem initiation at lateral positions. a member of a small homeodomain-leucine zipper family. Has overlapping functions with PHAVOLUTA and PHABULOSA.C.G.S.X.
0.011e-138At4g04490825779protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAC.G.S.X.
0.016e-136At4g13610826994MEE57 (maternal effect embryo arrest 57)F:protein binding, DNA binding, DNA (cytosine-5-)-methyltransferase activity;P:embryonic development ending in seed dormancy, DNA methylation;C:nucleus;BOMPAFVC.G.S.X.
0.026e-136At4g35150829667O-methyltransferase family 2 proteinF:methyltransferase activity, O-methyltransferase activity, protein dimerization activity;P:unknown;C:cytosol;PBFMOC.G.S.X.
0.016e-136At3g50160824178unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.016e-136At3g27670822389RST1 (RESURRECTION1)A novel protein, did not show high similarity to any protein of known function; reveals a novel genetic connection between lipid synthesis and embryo development. Expressed in all tissues examined including leaves, flowers, roots, stems, and siliques, but accumulation levels were not correlated with the degree to which different organs appeared affected by the mutation. Mutant plants showed alterations in the cuticular wax profiles and embryo development.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.063e-654Glycine maxGmaAffx.301.1.A1_atCD410347--1e-6At5g57240ORP4C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4C)C.G.S.X.
0.024e+032Hordeum vulgareHM08H10r_atHM08H10r--2e-1At4g36260STY2 (STYLISH 2)C.G.S.X.
0.034e+034Oryza sativaOsAffx.21446.2.A1_at---0C.G.S.X.
0.048e-136Populus trichocarpaPtpAffx.117578.1.S1_atBU886543hypothetical protein-3e-1At5g57240ORP4C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4C)C.G.S.X.
0.022e+034Triticum aestivumTaAffx.84704.1.S1_atCA630890--1e+0At3g10120unknown proteinC.G.S.X.
0.023e+032Vitis vinifera1621724_atCB341760--3e+0At5g25560zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.024e+032Zea maysZmAffx.1345.1.S1_s_at40794996-40--9e-41Atmg01330-C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0008202The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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