CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g57110

Gene name ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g57110 835815 ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8) Arabidopsis-autoinhibited Ca2+ -ATPase, isoform 8, contains all of the characteristic motifs of Ca2+ -transporting P-type Ca2+ -ATPases and is localized to the plasma membrane. S.X. H.G.
0.44 57.2 At5g42570 834264 - F:molecular_function unknown;P:intracellular protein transport;C:endoplasmic reticulum, plasma membrane;MPOFAB S.X. H.G.
0.33 38.1 At5g48250 834878 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:unknown;C:plasma membrane;POM S.X. H.G.
0.22 17.5 At5g61380 836259 TOC1 (TIMING OF CAB EXPRESSION 1) Pseudo response regulator involved in the generation of circadian rhythms. TOC1 appears to shorten the period of circumnutation speed. TOC1 contributes to the plant fitness (carbon fixation, biomass) by influencing the circadian clock period. PRR3 may increase the stability of TOC1 by preventing interactions between TOC1 and the F-box protein ZTL. Expression of TOC1 is correlated with rhythmic changes in chromatin organization. S.X. H.G.
0.18 11.4 At1g47710 841182 serpin, putative / serine protease inhibitor, putative F:serine-type endopeptidase inhibitor activity, cysteine-type endopeptidase inhibitor activity;P:biological_process unknown;C:apoplast;MVPBOAF S.X. H.G.
0.07 1.9 At5g39410 833937 binding / catalytic F:binding, catalytic activity;P:metabolic process;C:mitochondrion, plasma membrane, vacuole, membrane, chloroplast envelope;OBMFPA S.X. H.G.
0.03 0.6 At4g17110 - - - S.X. H.G.
0.01 0.2 At1g33230 840217 - F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;MPO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
50.2 99.8 GSM133407 Bramke_A1-warre-WTC GSE5711 Cold induced changes: differences between the Arabidopsis thaliana wild type and freezing sensitive mutants.
49.4 99.8 GSM74901 Wildtype_24H Cold_Rep2 GSE3326 ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
44.4 99.8 GSM131282 AtGen_6-1622_Cold(4°C)-Roots-24.0h_Rep2 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
42.9 99.8 GSM131279 AtGen_6-1611_Cold(4°C)-Shoots-24.0h_Rep1 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
42.4 99.8 GSM74900 Wildtype_24H Cold_Rep1 GSE3326 ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
40.6 99.8 GSM131281 AtGen_6-1621_Cold(4°C)-Roots-24.0h_Rep1 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
38.4 99.8 GSM131276 AtGen_6-1512_Cold(4°C)-Shoots-12.0h_Rep2 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
38.4 99.8 GSM131275 AtGen_6-1511_Cold(4°C)-Shoots-12.0h_Rep1 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
37.5 99.7 GSM184922 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
37.2 99.7 GSM133403 Bramke_A3-warre-S6C GSE5711 Cold induced changes: differences between the Arabidopsis thaliana wild type and freezing sensitive mutants.
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.28 3e-48 194 At3g21180 821671 ACA9 (AUTOINHIBITED CA(2+)-ATPASE 9) one of the type IIB calcium pump isoforms. encodes an autoinhibited Ca(2+)-ATPase that contains an N-terminal calmodulin binding autoinhibitory domain. C.G. S.X.
0.34 2e-46 188 At4g29900 829112 ACA10 (AUTOINHIBITED CA(2+)-ATPASE 10) one of the type IIB calcium pump isoforms. encodes an autoinhibited Ca(2+)-ATPase that contains an N-terminal calmodulin binding autoinhibitory domain. C.G. S.X.
0.03 3e-17 91 At3g57330 824900 ACA11 (autoinhibited Ca2+-ATPase 11) F:calmodulin binding, calcium-transporting ATPase activity;P:cation transport, calcium ion transport, metabolic process, ATP biosynthetic process;C:chloroplast, plasma membrane, vacuole;BMOFPAV C.G. S.X.
0.02 2e-12 75 At2g41560 818754 ACA4 (AUTO-INHIBITED CA(2+)-ATPASE, ISOFORM 4) encodes a calmodulin-regulated Ca(2+)-ATPase that improves salt tolerance in yeast. localized to the vacuole. C.G. S.X.
0.03 3e-11 71 At4g37640 829918 ACA2 (CALCIUM ATPASE 2) Encodes a calmodulin-regulated Ca(2+)-pump located in the endoplasmic reticulum. Belongs to plant 2B ATPase's with an N-terminal autoinhibitor. C.G. S.X.
0.06 1e-7 59 At3g22910 821863 calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA13) F:calmodulin binding, calcium-transporting ATPase activity;P:cation transport, calcium ion transport, metabolic process, ATP biosynthetic process;C:membrane;BMOFPAV C.G. S.X.
0.01 7e-6 54 At2g07560 815329 AHA6 (Arabidopsis H(+)-ATPase 6) F:ATPase activity;P:cation transport, metabolic process, ATP biosynthetic process;C:plasma membrane, membrane;BMOFPAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.21 1e-69 266 Glycine max Gma.541.1.S1_at AW156279 - - 5e-70 At5g57110 ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8) C.G. S.X.
0.18 6e-17 89 Hordeum vulgare Contig6173_at Contig6173 - - 2e-36 At3g21180 ACA9 (AUTOINHIBITED CA(2+)-ATPASE 9) C.G. S.X.
0.18 1e-39 167 Oryza sativa Os02g0176700 9630.m00757 - Potential calcium-transporting ATPase 9, plasmamembrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 9) 4e-47 At3g21180 ACA9 (AUTOINHIBITED CA(2+)-ATPASE 9) C.G. S.X.
0.31 1e-42 176 Populus trichocarpa PtpAffx.209467.1.S1_at pmrna18776 autoinhibited calcium ATPase - 6e-136 At3g21180 ACA9 (AUTOINHIBITED CA(2+)-ATPASE 9) C.G. S.X.
0.13 2e-9 65 Triticum aestivum Ta.4760.1.S1_x_at CD936415 - - 3e-32 At3g21180 ACA9 (AUTOINHIBITED CA(2+)-ATPASE 9) C.G. S.X.
0.18 2e-55 216 Vitis vinifera 1614028_at CB976052 hypothetical protein LOC100259808 - 1e-55 At5g57110 ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8) C.G. S.X.
0.17 1e-45 184 Zea mays Zm.17277.1.S1_at CF273093 - - 1e-45 At5g57110 ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009624 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a nematode.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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