CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g57100

Gene name transporter-related

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g57100 835814 transporter-related F:unknown;P:unknown;C:membrane;PMFOB S.X. H.G.
0.51 66.3 At5g20540 832176 ATBRXL4 (BREVIS RADIX-LIKE 4) Belongs to five-member BRX gene family. Arabidopsis BRX genes share high levels of similarity among each others, with several conserved domains. The most distinct is BRX domain - highly conserved in all BRX genes among distantly related species. This protein-protein interaction domain is required and sufficient for BRX activity. S.X. H.G.
0.48 62.5 At5g25080 832579 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO S.X. H.G.
0.48 62.5 At3g53540 824522 unknown protein F:unknown;P:unknown;C:plasma membrane;OMBFPAV S.X. H.G.
0.48 62.5 At5g25170 832588 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MPOF S.X. H.G.
0.45 58.3 At5g25150 832586 TAF5 (TBP-ASSOCIATED FACTOR 5) Encodes a putative TATA-binding-protein associated factor TAF5. TAFs are subunits of the general transcription factor IID (TFIID). S.X. H.G.
0.44 57.2 At5g19480 832068 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVA S.X. H.G.
0.44 57.2 At2g27100 817252 SE (SERRATE) Identified as a leaf form mutant by Redei having serrated leaves. Further analysis of the single loss of function allele indicated pleiotropic effects extending to many aspects of shoot development such as taller meristems, alterations in phase transition, phyllotaxy and branching. Encodes a single zinc finger containing protein that is expressed in meristems and organ primordia. S.X. H.G.
0.44 57.2 At2g03780 814905 translin family protein F:sequence-specific DNA binding, DNA binding;P:biological_process unknown;C:unknown;MFAOP S.X. H.G.
0.42 53.9 At2g01820 814713 leucine-rich repeat protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:pollen development;C:plasma membrane, plant-type cell wall;MPOBFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
129.4 99.9 E-ATMX-13-raw-cel-1556149743
98.7 99.9 GSM134208 Murray_3-4_D7-GROWTH_Rep1_ATH1 GSE5750 Growth of suspension-cultured cells
91.9 99.9 E-ATMX-13-raw-cel-1556149855
80.4 99.9 E-MEXP-1797-raw-cel-1669767949
69.1 99.9 E-MEXP-1797-raw-cel-1669768048
67.0 99.8 GSM133813 Diamond_A-2-Diamo-met_SLD GSE5735 Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
66.1 99.8 E-MEXP-1797-raw-cel-1669768057
61.6 99.8 E-MEXP-1797-raw-cel-1669768075
56.2 99.8 E-MEXP-1797-raw-cel-1669768003
55.5 99.8 E-MEXP-1797-raw-cel-1669767958
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 1e-1 38 At4g32551 829390 LUG (LEUNIG) LEUNIG regulates floral organ identity,gynoecium and ovule development. Negatively regulates AGAMOUS . Encodes a glutamine-rich protein with seven WD repeats similar to transcriptional corepressors. C.G. S.X.
0.02 1e-1 38 At2g20880 816622 AP2 domain-containing transcription factor, putative F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, cytoplasm;POMBFV C.G. S.X.
0.01 1e-1 38 At1g35520 840447 ARF15 (AUXIN RESPONSE FACTOR 15) F:transcription factor activity;P:regulation of transcription;C:nucleus;P C.G. S.X.
0.02 6e-1 36 At5g15820 831439 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB C.G. S.X.
0.01 6e-1 36 At5g19090 832028 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;MBOPFVA C.G. S.X.
0.01 6e-1 36 At5g25110 832582 CIPK25 (CBL-INTERACTING PROTEIN KINASE 25) member of AtCIPKs C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-1 38 Glycine max HgAffx.10903.1.S1_at CB378235 - - 8e-5 At1g22330 RNA binding / nucleic acid binding / nucleotide binding C.G. S.X.
0.02 3e-1 36 Hordeum vulgare Contig16374_at Contig16374 - - 1e+0 At3g42940 - C.G. S.X.
0.03 1e+0 36 Oryza sativa OsAffx.26898.1.S1_at - - - 0 C.G. S.X.
0.17 2e-26 121 Populus trichocarpa Ptp.2815.1.S1_at DN485926 hypothetical protein - 1e-26 At5g57100 transporter-related C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.38217.1.S1_x_at BJ244494 - - 7e+0 At5g11690 ATTIM17-3 C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1613372_at CF514636 similar to P-glycoprotein - 2e-5 At1g06070 bZIP transcription factor, putative (bZIP69) C.G. S.X.
0.02 1e+0 34 Zea mays Zm.6506.1.A1_a_at AI714910 replication protein A 70 kDa DNA-binding subunit - 1e-10 At5g08020 RPA70B (RPA70-KDA SUBUNIT B) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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