CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g56980

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.69 82.9 At5g56980 835800 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PM S.X. H.G.
0.88 94.0 At5g66620 836794 DAR6 (DA1-RELATED PROTEIN 6) F:zinc ion binding;P:unknown;C:unknown;MOBFPVA S.X. H.G.
0.86 93.1 At4g26200 828726 ACS7 Member of a family of proteins in Arabidopsis that encode 1-Amino-cyclopropane-1-carboxylate synthase, an enzyme involved in ethylene biosynthesis. Not expressed in response to IAA. S.X. H.G.
0.85 92.4 At1g30135 839893 JAZ8 (JASMONATE-ZIM-DOMAIN PROTEIN 8) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.83 91.4 At4g38420 829999 sks9 (SKU5 Similar 9) F:oxidoreductase activity, copper ion binding;P:unknown;C:plant-type cell wall;FBPMOA S.X. H.G.
0.83 91.4 At1g51620 841587 protein kinase family protein F:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA S.X. H.G.
0.82 90.9 At1g33760 840267 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. S.X. H.G.
0.82 90.9 At5g66640 836796 DAR3 (DA1-RELATED PROTEIN 3) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMBF S.X. H.G.
0.81 90.4 At4g37770 829933 ACS8 Encodes an auxin inducible ACC synthase. S.X. H.G.
0.79 89.1 At1g61460 842440 S-locus protein kinase, putative F:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:unknown;MPOBFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
393.9 100.0 E-MEXP-807-raw-cel-1173273196
304.3 100.0 E-MEXP-807-raw-cel-1173273088
245.0 100.0 E-MEXP-807-raw-cel-1173273223
236.9 100.0 E-MEXP-807-raw-cel-1173273116
229.3 100.0 E-MEXP-807-raw-cel-1173273170
223.5 100.0 E-MEXP-807-raw-cel-1173273060
128.5 99.9 E-MEXP-807-raw-cel-1173273144
119.3 99.9 E-MEXP-807-raw-cel-1173273252
58.4 99.8 GSM184559 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes with KNO3, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
49.7 99.8 E-MEXP-98-raw-cel-320189024
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.31 2e-10 67 At4g26130 828719 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOF C.G. S.X.
0.02 9e-3 42 At2g43400 818941 ETFQO (electron-transfer flavoprotein:ubiquinone oxidoreductase) Encodes a unique electron-transfer flavoprotein:ubiquinone oxidoreductase that is localized to the mitochondrion. Mutants are more sensitive to sugar starvation when plants are kept in the dark for long periods. C.G. S.X.
0.01 4e-2 40 At5g24470 832518 APRR5 (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 5) Encodes a pseudo-response regulator whose mutation affects various circadian-associated biological events such as flowering time in the long-day photoperiod conditions, red light sensitivity of seedlings during early photomorphogenesis, and the period of free-running rhythms of certain clock-controlled genes including CCA1 and APRR1/TOC1 in constant white light. C.G. S.X.
0.02 4e-2 40 At4g23750 828475 CRF2 (CYTOKININ RESPONSE FACTOR 2) encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. C.G. S.X.
0.01 4e-2 40 At2g04030 814930 CR88 Encodes a chloroplast-targeted 90-kDa heat shock protein located in the stroma involved in red-light mediated deetiolation response. Mutants are resistant to chlorate, have elongated hypocotyls in light, and affect the expression of NR2, CAB, and RBCS but NOT NR1 and NiR. C.G. S.X.
0.01 4e-2 40 At1g55550 842004 ATP binding / microtubule motor F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:mitochondrion;MOFPB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-1 38 Glycine max GmaAffx.86847.1.S1_at BI787116 - - 1e+0 At3g21220 ATMKK5 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5) C.G. S.X.
0.02 4e-3 42 Hordeum vulgare Contig11817_at Contig11817 - - 3e-2 At5g45590 unknown protein C.G. S.X.
0.03 3e-1 38 Oryza sativa Os.2965.1.S1_at - - - 0 C.G. S.X.
0.03 1e-2 42 Populus trichocarpa PtpAffx.207591.1.S1_x_at pmrna15065 hypothetical protein - 6e-2 At4g13850 GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2) C.G. S.X.
0.03 4e-2 40 Triticum aestivum TaAffx.92327.1.S1_at BJ270633 - - 9e-1 At5g66815 unknown protein C.G. S.X.
0.07 1e-5 50 Vitis vinifera 1613431_at CF415370 - - 2e-5 At5g56980 unknown protein C.G. S.X.
0.03 1e+0 34 Zea mays ZmAffx.283.1.S1_at AI670414 - - 3e+0 At3g23175 lesion inducing protein-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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