Gene omics information

Query gene ID At5g56950
Gene name NAP1
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g56950835797NAP1Encodes a member of a small gene family of proteins with similarity to nucleosome assembly proteins.May function in nucleotide excision repair. Loss of function mutations have no obvious visible phenotypes but do seem to affect transcription of NER related genes.S.X.H.G.
0.4152.4At1g31817840071NFD3 (NUCLEAR FUSION DEFECTIVE 3)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome, intracellular;BOPMAFS.X.H.G.
0.4050.8At5g26360832705chaperonin, putativeF:unfolded protein binding, protein binding, ATP binding;P:protein folding, cellular protein metabolic process;C:unknown;BOMFPAVS.X.H.G.
0.4050.8At2g20280816547zinc finger (CCCH-type) family proteinF:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MOFPVBAS.X.H.G.
0.3948.4At2g40290818621eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putativeF:RNA binding, translation initiation factor activity;P:translation;C:nucleus;BOMAFPVS.X.H.G.
0.3948.4At3g56150824781EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C)member of eIF3c - eukaryotic initiation factor 3cS.X.H.G.
0.3846.7At1g14710838036hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFVBAS.X.H.G.
0.3846.7At2g2014081653326S protease regulatory complex subunit 4, putativeF:hydrolase activity, nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:N-terminal protein myristoylation;C:plasma membrane;OBMFPAVS.X.H.G.
0.3643.6At1g79650844304RAD23putative DNA repair protein RAD23S.X.H.G.
0.3439.8At3g03960819549chaperonin, putativeF:unfolded protein binding, protein binding, ATP binding;P:protein folding, cellular protein metabolic process;C:membrane;BOMFAPS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
35.399.7GSM311273Laser capture microdissected (LCM) embryo proper at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
28.499.7GSM284384Arabidopsis GEP5GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
28.399.7GSM142751MJ001_ATH1_A2-jones-WT2GSE6165The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
27.899.7GSM142750MJ001_ATH1_A1-jones-WT1GSE6165The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
27.599.7GSM284385Arabidopsis GEP6GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
26.699.7GSM311274Laser capture microdissected (LCM) embryo proper at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
25.099.6GSM311287Laser capture microdissected (LCM) embryo proper at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
22.799.6GSM184889Arabidopsis, root cells, epidermis and lateral root cap, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with salt
21.199.6GSM142754MJ001_ATH1_A5-jones-WT-Rep3GSE6165The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
18.899.5GSM284391Arabidopsis GPE3GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.760866At4g26110828717NAP1Encodes a member of a small gene family of proteins with similarity to nucleosome assembly proteins.May function in nucleotide excision repair. Loss of function mutations have no obvious visible phenotypes but do seem to affect transcription of NER related genes.C.G.S.X.
0.442e-53210At2g19480816467NAP1This gene is predicted to encode a nucleosome assembly protein. Plant lines expressing an RNAi construct directed against this gene show a reduction in agrobacterium-mediated root transformation.C.G.S.X.
0.064e-240At3g13782820589NAP1F:chromatin binding, DNA binding;P:response to cadmium ion, nucleosome assembly, nucleotide-excision repair;C:nucleus, cytoplasm;MOFPC.G.S.X.
0.014e-240At2g27000817242CYP705A8member of CYP705AC.G.S.X.
0.021e-138At5g61710836293unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PC.G.S.X.
0.011e-138At3g56300824797tRNA synthetase class I (C) family proteinF:cysteine-tRNA ligase activity, nucleotide binding, ATP binding;P:cysteinyl-tRNA aminoacylation, translation;C:cytoplasm;OBMFAPVC.G.S.X.
0.021e-138At3g58530825022F-box family protein-relatedF:unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBVC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.433e-68260Glycine maxGma.44.1.S1_atL38856.1nucleosome assembly protein 1-3e-68At5g56950NAP1C.G.S.X.
0.273e-1995Hordeum vulgareContig20736_atContig20736--2e-40At4g26110NAP1C.G.S.X.
0.252e-36155Oryza sativaOs06g0149400AK071177.1-Nucleosome assembly protein 11e-36At5g56950NAP1C.G.S.X.
0.365e-79295Populus trichocarpaPtpAffx.18926.1.S1_atCV225832nucleosome/chromatin assembly factor group-5e-64At2g19480NAP1C.G.S.X.
0.212e-40167Triticum aestivumTa.7602.1.S1_atBJ250297nucleosome assembly protein I-2e-26At4g26110NAP1C.G.S.X.
0.222e-22105Vitis vinifera1606519_atCB342417hypothetical protein LOC100261732-2e-22At5g56950NAP1C.G.S.X.
0.193e-25115Zea maysZm.14710.1.S1_atAY232823.1nucleosome/chromatin assembly factor group A-1e-5At4g26110NAP1C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0006281The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
XGO:0009294The introduction and uptake of foreign genetic material (DNA or RNA) into a cell, and often the expression of that genetic material.
CGO:0006334The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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