Gene omics information

Query gene ID At5g56300
Gene name GAMT2 (GIBBERELLIC ACID METHYLTRANSFERASE 2)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.124.9At5g56300835729GAMT2 (GIBBERELLIC ACID METHYLTRANSFERASE 2)A member of the Arabidopsis SABATH methyltransferase gene family. Encodes GAMT2, a methyltransferase that uses S-adenosine-L-methionine (SAM) as a methyl donor to methylate the carboxyl group of GAs, resulting in the methyl esters of GAs (MeGAs). Expressed most highly in the siliques during seed development.S.X.H.G.
0.4050.8At1g49800841403unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.4050.8At4g32170829349CYP96A2member of CYP96AS.X.H.G.
0.2522.6At1g11590837702pectin methylesterase, putativeF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFOMS.X.H.G.
0.1710.2At4g12960826908gamma interferon responsive lysosomal thiol reductase family protein / GILT family proteinF:catalytic activity;P:biological_process unknown;C:endomembrane system;MPOFS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
1032.2100.0GSM311294Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
368.5100.0GSM311293Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
246.0100.0GSM311285Laser capture microdissected (LCM) whole seed sections at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
216.7100.0GSM147964WT Globular Stage Seed 2GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
214.4100.0GSM311284Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
201.7100.0GSM147963WT Globular Stage Seed 1GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
170.0100.0GSM147966lec1-1 Globular Stage Seed 2GSE1051Seed development in LEAFY COTYLEDON1 mutants
157.399.9GSM311286Laser capture microdissected (LCM) whole seed sections at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
126.899.9GSM284398Arabidopsis GGSc2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
96.399.9GSM284387Arabidopsis GSUS4bGSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.234e-1169At4g26420828748GAMT1A member of the Arabidopsis SABATH methyltransferase gene family. Encodes GAMT1, a methyltransferase that uses S-adenosine-L-methionine (SAM) as a methyl donor to methylate the carboxyl group of GAs, resulting in the methyl esters of GAs (MeGAs). Expressed most highly in the siliques during seed development.C.G.S.X.
0.034e-240At5g58800835997quinone reductase family proteinF:oxidoreductase activity, FMN binding;P:negative regulation of transcription;C:plasma membrane;BOFPAMVC.G.S.X.
0.014e-240At4g18700827604CIPK12 (CBL-INTERACTING PROTEIN KINASE 12)Encodes CBL-interacting protein kinase 12 (CIPK12).C.G.S.X.
0.011e-138At5g44800834510CHR4 (CHROMATIN REMODELING 4)F:in 7 functions;P:chromatin assembly or disassembly, regulation of transcription;C:chromatin, nucleus;MOFBPVAC.G.S.X.
0.071e-138At4g26460828752-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.021e-138At4g24770828579RBP31 (31-KDA RNA BINDING PROTEIN)Encodes a chloroplast RNA-binding protein. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase).C.G.S.X.
0.021e-138At2g41380818736embryo-abundant protein-relatedF:methyltransferase activity;P:response to cadmium ion;C:mitochondrion;BPFOMAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.033e+034Glycine maxHgAffx.24198.1.S1_atCK350482--1e+0At5g56300GAMT2 (GIBBERELLIC ACID METHYLTRANSFERASE 2)C.G.S.X.
0.024e+032Hordeum vulgareS0000200065C10F1_atS0000200065C10F1--2e+0At2g44700kelch repeat-containing F-box family proteinC.G.S.X.
0.035e+034Oryza sativaOsAffx.31495.1.S1_at---0C.G.S.X.
0.021e-242Populus trichocarpaPtpAffx.201257.1.S1_atpmrna2493S-adenosyl-L-methionine:carboxyl methyltransferase family protein-1e-14At5g55250IAMT1 (IAA CARBOXYLMETHYLTRANSFERASE 1)C.G.S.X.
0.036e-136Triticum aestivumTaAffx.86225.1.S1_atCA613684--4e+0At5g14340AtMYB40 (myb domain protein 40)C.G.S.X.
0.032e-136Vitis vinifera1615482_atCB979575hypothetical protein LOC100257601-7e-10At3g47560esterase/lipase/thioesterase family proteinC.G.S.X.
0.022e-136Zea maysZm.11799.1.A1_atCK985664hypothetical protein LOC100192656-1e+0At5g41908unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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