CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g56300

Gene name GAMT2 (GIBBERELLIC ACID METHYLTRANSFERASE 2)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.12 4.9 At5g56300 835729 GAMT2 (GIBBERELLIC ACID METHYLTRANSFERASE 2) A member of the Arabidopsis SABATH methyltransferase gene family. Encodes GAMT2, a methyltransferase that uses S-adenosine-L-methionine (SAM) as a methyl donor to methylate the carboxyl group of GAs, resulting in the methyl esters of GAs (MeGAs). Expressed most highly in the siliques during seed development. S.X. H.G.
0.40 50.8 At1g49800 841403 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.40 50.8 At4g32170 829349 CYP96A2 member of CYP96A S.X. H.G.
0.25 22.6 At1g11590 837702 pectin methylesterase, putative F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFOM S.X. H.G.
0.17 10.2 At4g12960 826908 gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein F:catalytic activity;P:biological_process unknown;C:endomembrane system;MPOF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
1032.2 100.0 GSM311294 Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
368.5 100.0 GSM311293 Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
246.0 100.0 GSM311285 Laser capture microdissected (LCM) whole seed sections at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
216.7 100.0 GSM147964 WT Globular Stage Seed 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
214.4 100.0 GSM311284 Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
201.7 100.0 GSM147963 WT Globular Stage Seed 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
170.0 100.0 GSM147966 lec1-1 Globular Stage Seed 2 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
157.3 99.9 GSM311286 Laser capture microdissected (LCM) whole seed sections at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
126.8 99.9 GSM284398 Arabidopsis GGSc2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
96.3 99.9 GSM284387 Arabidopsis GSUS4b GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.23 4e-11 69 At4g26420 828748 GAMT1 A member of the Arabidopsis SABATH methyltransferase gene family. Encodes GAMT1, a methyltransferase that uses S-adenosine-L-methionine (SAM) as a methyl donor to methylate the carboxyl group of GAs, resulting in the methyl esters of GAs (MeGAs). Expressed most highly in the siliques during seed development. C.G. S.X.
0.03 4e-2 40 At5g58800 835997 quinone reductase family protein F:oxidoreductase activity, FMN binding;P:negative regulation of transcription;C:plasma membrane;BOFPAMV C.G. S.X.
0.01 4e-2 40 At4g18700 827604 CIPK12 (CBL-INTERACTING PROTEIN KINASE 12) Encodes CBL-interacting protein kinase 12 (CIPK12). C.G. S.X.
0.01 1e-1 38 At5g44800 834510 CHR4 (CHROMATIN REMODELING 4) F:in 7 functions;P:chromatin assembly or disassembly, regulation of transcription;C:chromatin, nucleus;MOFBPVA C.G. S.X.
0.07 1e-1 38 At4g26460 828752 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 1e-1 38 At4g24770 828579 RBP31 (31-KDA RNA BINDING PROTEIN) Encodes a chloroplast RNA-binding protein. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase). C.G. S.X.
0.02 1e-1 38 At2g41380 818736 embryo-abundant protein-related F:methyltransferase activity;P:response to cadmium ion;C:mitochondrion;BPFOMA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e+0 34 Glycine max HgAffx.24198.1.S1_at CK350482 - - 1e+0 At5g56300 GAMT2 (GIBBERELLIC ACID METHYLTRANSFERASE 2) C.G. S.X.
0.02 4e+0 32 Hordeum vulgare S0000200065C10F1_at S0000200065C10F1 - - 2e+0 At2g44700 kelch repeat-containing F-box family protein C.G. S.X.
0.03 5e+0 34 Oryza sativa OsAffx.31495.1.S1_at - - - 0 C.G. S.X.
0.02 1e-2 42 Populus trichocarpa PtpAffx.201257.1.S1_at pmrna2493 S-adenosyl-L-methionine:carboxyl methyltransferase family protein - 1e-14 At5g55250 IAMT1 (IAA CARBOXYLMETHYLTRANSFERASE 1) C.G. S.X.
0.03 6e-1 36 Triticum aestivum TaAffx.86225.1.S1_at CA613684 - - 4e+0 At5g14340 AtMYB40 (myb domain protein 40) C.G. S.X.
0.03 2e-1 36 Vitis vinifera 1615482_at CB979575 hypothetical protein LOC100257601 - 7e-10 At3g47560 esterase/lipase/thioesterase family protein C.G. S.X.
0.02 2e-1 36 Zea mays Zm.11799.1.A1_at CK985664 hypothetical protein LOC100192656 - 1e+0 At5g41908 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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