Gene omics information

Query gene ID At5g56180
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.8994.6At5g56180835717ATARP8 (ACTIN-RELATED PROTEIN 8)encodes a protein whose sequence is similar to actin-related proteins (ARPs) in other organisms. Member of nuclear ARP family of genes.S.X.H.G.
0.7586.9At4g36400829792FAD linked oxidase family proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:biological_process unknown;C:mitochondrion;BOFMAPS.X.H.G.
0.6075.7At1g04970839357lipid-binding serum glycoprotein family proteinF:lipid binding;P:biological_process unknown;C:plasma membrane, vacuole;MPOS.X.H.G.
0.4050.8At3g27090822327-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMBS.X.H.G.
0.135.8At4g37880829944protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MFOPS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
25.699.7GSM205185protoplast_KIN10_rep2GSE8257Identification of KIN10-target genes in Arabidopsis mesophyll cells
23.899.6GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
16.099.5GSM133304RIKEN-NAKABAYASHI1BGSE5700AtGenExpress: Effect of ABA during seed imbibition
12.599.3GSM205159protoplast_KIN10_rep1GSE8257Identification of KIN10-target genes in Arabidopsis mesophyll cells
10.999.2GSM75521slr-1 6h NAA replicate 2GSE3350SLR/IAA14-dependent auxin induced lateral root initiation
10.799.2GSM133117RIKEN-YAMAUCHI1AGSE5687AtGenExpress: Different temperature treatment of seeds
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.022e-138At1g35040840389unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PC.G.S.X.
0.017e-136At2g40320818625unknown proteinF:unknown;P:biological_process unknown;C:unknown;PMOC.G.S.X.
0.017e-136At2g39250818510SNZ (SCHNARCHZAPFEN)Encodes a AP2 domain transcription factor that can repress flowering. SNZ and its paralogous gene, SCHLAFMUTZE (SMZ), share a signature with partial complementarity to the miR172 microRNA, whose precursor is induced upon flowering.C.G.S.X.
0.017e-136At2g26950817236AtMYB104 (myb domain protein 104)Member of the R2R3 factor gene family.C.G.S.X.
0.017e-136At2g30520817601RPT2 (ROOT PHOTOTROPISM 2)light inducible root phototropism 2 encoding a signal transducer of the phototropic response in ArabidopsisC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.203e-1377Glycine maxGmaAffx.16446.1.S1_atAW350278--1e-13At5g56180ATARP8 (ACTIN-RELATED PROTEIN 8)C.G.S.X.
0.023e-136Hordeum vulgareContig16089_atContig16089--9e-15At4g33380unknown proteinC.G.S.X.
0.101e-1379Oryza sativaOs04g0667700AK100366.1-Actin-related protein 8A9e-14At5g56180ATARP8 (ACTIN-RELATED PROTEIN 8)C.G.S.X.
0.203e-757Populus trichocarpaPtpAffx.128322.1.S1_atCX658156actin related protein-7e-8At5g56180ATARP8 (ACTIN-RELATED PROTEIN 8)C.G.S.X.
0.072e-138Triticum aestivumTa.25218.1.S1_atCD883116--1e-1At5g56180ATARP8 (ACTIN-RELATED PROTEIN 8)C.G.S.X.
0.066e-857Vitis vinifera1616439_atBQ799447hypothetical protein LOC100254870-7e-8At5g56180ATARP8 (ACTIN-RELATED PROTEIN 8)C.G.S.X.
0.022e-240Zea maysZm.8597.1.A1_atBM347670dolichyl-P-Man Man-4e-1At1g73885unknown proteinC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
SGO:0030029Any cellular process that depends upon or alters the actin cytoskeleton, that part of the cytoskeleton comprising actin filaments and their associated proteins.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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