CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g56180

Gene name ATARP8 (ACTIN-RELATED PROTEIN 8)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.89 94.6 At5g56180 835717 ATARP8 (ACTIN-RELATED PROTEIN 8) encodes a protein whose sequence is similar to actin-related proteins (ARPs) in other organisms. Member of nuclear ARP family of genes. S.X. H.G.
0.75 86.9 At4g36400 829792 FAD linked oxidase family protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:biological_process unknown;C:mitochondrion;BOFMAP S.X. H.G.
0.60 75.7 At1g04970 839357 lipid-binding serum glycoprotein family protein F:lipid binding;P:biological_process unknown;C:plasma membrane, vacuole;MPO S.X. H.G.
0.40 50.8 At3g27090 822327 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMB S.X. H.G.
0.13 5.8 At4g37880 829944 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MFOP S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
25.6 99.7 GSM205185 protoplast_KIN10_rep2 GSE8257 Identification of KIN10-target genes in Arabidopsis mesophyll cells
23.8 99.6 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
16.0 99.5 GSM133304 RIKEN-NAKABAYASHI1B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
13.3 99.4 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
12.5 99.3 E-MEXP-1443-raw-cel-1581869573
12.5 99.3 GSM205159 protoplast_KIN10_rep1 GSE8257 Identification of KIN10-target genes in Arabidopsis mesophyll cells
11.3 99.3 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
10.9 99.2 GSM75521 slr-1 6h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
10.7 99.2 GSM133117 RIKEN-YAMAUCHI1A GSE5687 AtGenExpress: Different temperature treatment of seeds
9.8 99.1 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 2e-1 38 At1g35040 840389 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.01 7e-1 36 At2g40320 818625 unknown protein F:unknown;P:biological_process unknown;C:unknown;PMO C.G. S.X.
0.01 7e-1 36 At2g39250 818510 SNZ (SCHNARCHZAPFEN) Encodes a AP2 domain transcription factor that can repress flowering. SNZ and its paralogous gene, SCHLAFMUTZE (SMZ), share a signature with partial complementarity to the miR172 microRNA, whose precursor is induced upon flowering. C.G. S.X.
0.01 7e-1 36 At2g26950 817236 AtMYB104 (myb domain protein 104) Member of the R2R3 factor gene family. C.G. S.X.
0.01 7e-1 36 At2g30520 817601 RPT2 (ROOT PHOTOTROPISM 2) light inducible root phototropism 2 encoding a signal transducer of the phototropic response in Arabidopsis C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.20 3e-13 77 Glycine max GmaAffx.16446.1.S1_at AW350278 - - 1e-13 At5g56180 ATARP8 (ACTIN-RELATED PROTEIN 8) C.G. S.X.
0.02 3e-1 36 Hordeum vulgare Contig16089_at Contig16089 - - 9e-15 At4g33380 unknown protein C.G. S.X.
0.10 1e-13 79 Oryza sativa Os04g0667700 AK100366.1 - Actin-related protein 8A 9e-14 At5g56180 ATARP8 (ACTIN-RELATED PROTEIN 8) C.G. S.X.
0.20 3e-7 57 Populus trichocarpa PtpAffx.128322.1.S1_at CX658156 actin related protein - 7e-8 At5g56180 ATARP8 (ACTIN-RELATED PROTEIN 8) C.G. S.X.
0.07 2e-1 38 Triticum aestivum Ta.25218.1.S1_at CD883116 - - 1e-1 At5g56180 ATARP8 (ACTIN-RELATED PROTEIN 8) C.G. S.X.
0.06 6e-8 57 Vitis vinifera 1616439_at BQ799447 hypothetical protein LOC100254870 - 7e-8 At5g56180 ATARP8 (ACTIN-RELATED PROTEIN 8) C.G. S.X.
0.02 2e-2 40 Zea mays Zm.8597.1.A1_at BM347670 dolichyl-P-Man Man - 4e-1 At1g73885 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0030029 Any cellular process that depends upon or alters the actin cytoskeleton, that part of the cytoskeleton comprising actin filaments and their associated proteins.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage