Gene omics information

Query gene ID At5g56140
Gene name KH domain-containing protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g56140835713KH domain-containing proteinF:RNA binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPBOFVAS.X.H.G.
0.6176.7At2g45980819206unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.5974.7At5g22360832297ATVAMP714 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 714)Member of Synaptobrevin-like AtVAMP7C, v-SNARE protein family.S.X.H.G.
0.5368.6At1g64040842708TOPP3Encodes the catalytic subunit of a Type 1 phosphoprotein Ser/Thr phosphatase, expressed in roots, shoots and flowers.S.X.H.G.
0.5368.6At4g22750828372zinc finger (DHHC type) family proteinF:zinc ion binding;P:unknown;C:endomembrane system;MOFPS.X.H.G.
0.5368.6At4g05150825863octicosapeptide/Phox/Bem1p (PB1) domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOBS.X.H.G.
0.5065.3At5g10450830909GRF6 (G-box regulating factor 6)Encodes a member of the 14-3-3 gene family that is a lambda isoform (14-3-3λ). Interacts with APX3 (ascorbate peroxidase) and AKR2 , suggesting a role in mediating oxidative metabolism in stress response. This protein was shown to colocalize and interact with SERK1 by which it is phosphorylated. This protein is also reported to interact with the phosphorylated form of the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1.S.X.H.G.
0.3643.6At4g02080827368ATSAR2 (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 2)A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases.S.X.H.G.
0.2930.3At2g45670819175calcineurin B subunit-relatedF:calcium ion binding, acyltransferase activity;P:metabolic process;C:unknown;MPBOFS.X.H.G.
0.157.8At3g46510823804PUB13 (PLANT U-BOX 13)Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
42.199.8GSM133117RIKEN-YAMAUCHI1AGSE5687AtGenExpress: Different temperature treatment of seeds
23.499.6GSM133304RIKEN-NAKABAYASHI1BGSE5700AtGenExpress: Effect of ABA during seed imbibition
23.499.6GSM38670DSNPGSE2268Arabidopsis polysome microarray
19.399.6GSM128650Underwood_1-3_Cor-10e6-24h_Rep3_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
16.099.5GSM128676Underwood_1-29_DC3000-10e8-7h_Rep2_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
15.499.5GSM25316648h into an extended nightCGSE10016Expression data of Arabidopsis thaliana rosettes in an extended night
15.199.4GSM128662Underwood_1-15_Cor-5x10e7-10h_Rep3_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
14.899.4GSM38668NSNPGSE2268Arabidopsis polysome microarray
14.199.4GSM128649Underwood_1-2_Cor-10e6-24h_Rep2_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
13.299.4GSM133303RIKEN-NAKABAYASHI1AGSE5700AtGenExpress: Effect of ABA during seed imbibition
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.570795At4g26480828754KH domain-containing proteinF:nicotianamine synthase activity, RNA binding, nucleic acid binding;P:nicotianamine biosynthetic process;C:cellular_component unknown;MPFOBC.G.S.X.
0.083e-859At3g08620820009KH domain-containing proteinF:RNA binding, nucleic acid binding;P:biological_process unknown;C:unknown;MPFOC.G.S.X.
0.052e-344At2g38610818443KH domain-containing proteinF:RNA binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOC.G.S.X.
0.011e-138At5g53060835386KH domain-containing proteinF:RNA binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBVC.G.S.X.
0.021e-138At4g19865827732kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMOBVFC.G.S.X.
0.015e-136At4g29780829100unknown proteinF:unknown;P:unknown;C:cellular_component unknown;MPFC.G.S.X.
0.015e-136At1g48280841248hydroxyproline-rich glycoprotein family proteinF:unknown;P:biological_process unknown;C:unknown;MPOFBVAC.G.S.X.
0.015e-136At1g50250841447FTSH1 (FtsH protease 1)encodes an FTSH protease that is localized to the chloroplast. Involved in the D1 repair cycle of Photosystem II. FtsH1 and FtsH5 are interchangeable in thylakoid membranes.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.125e-1789Glycine maxGmaAffx.88549.1.S1_atAI444104--2e-17At5g56140KH domain-containing proteinC.G.S.X.
0.165e-24111Hordeum vulgareContig5396_atContig5396--2e-23At5g56140KH domain-containing proteinC.G.S.X.
0.167e-1479Oryza sativaOs02g0722700CB645017-Conserved hypothetical protein3e-14At5g56140KH domain-containing proteinC.G.S.X.
0.295e-23109Populus trichocarpaPtp.3942.2.S1_atCK116503hypothetical protein-6e-13At4g26480KH domain-containing proteinC.G.S.X.
0.162e-21103Triticum aestivumTa.3001.1.S1_atCK211723--4e-21At5g56140KH domain-containing proteinC.G.S.X.
0.031e-136Vitis vinifera1611821_atBQ799421hypothetical protein LOC100259245-1e+0At1g52191-C.G.S.X.
0.201e-1479Zea maysZm.10170.2.S1_atBM078288Hypothetical protein LOC100194222-3e-14At5g56140KH domain-containing proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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