CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g56080

Gene name NAS2 (NICOTIANAMINE SYNTHASE 2)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g56080 835707 NAS2 (NICOTIANAMINE SYNTHASE 2) Encodes a protein with nicotianamine synthase activity. Its transcript levels rise in roots in response to zinc deficiency and rise in leaves in response to elevated levels of zinc. S.X. H.G.
0.18 11.4 At3g08040 819995 FRD3 (FERRIC REDUCTASE DEFECTIVE 3) Encodes a member of the MATE (multidrug and toxin efflux family), expressed in roots but not shoots. Mutants accumulate excess iron, manganese and zinc, and express root Fe(III) chelatase activity even under iron sufficiency conditions. FRD3 is likely to function in root xylem loading of an iron chelator or other factor necessary for efficient iron uptake out of the xylem or apoplastic space and into leaf cells. S.X. H.G.
0.10 3.4 At5g45070 834538 AtPP2-A8 (Phloem protein 2-A8) F:carbohydrate binding;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P S.X. H.G.
0.09 2.8 At3g25190 822112 nodulin, putative F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFA S.X. H.G.
0.09 2.8 At1g74760 - - - S.X. H.G.
0.06 1.4 At5g04950 830377 NAS1 (NICOTIANAMINE SYNTHASE 1) Encodes a nicotianamide synthase. S.X. H.G.
0.06 1.4 At5g49350 3771473 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBOPFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
452.2 100.0 GSM75520 slr-1 2h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
360.6 100.0 GSM75516 slr-1 0h NAA replicate 1 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
323.8 100.0 GSM75517 slr-1 2h NAA replicate 1 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
323.2 100.0 GSM75519 slr-1 0h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
305.7 100.0 GSM75518 slr-1 6h NAA replicate 1 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
186.8 100.0 GSM75521 slr-1 6h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
181.4 100.0 GSM75511 Col-0 6h MOCK replicate 1 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
154.7 99.9 GSM184930 Arabidopsis, whole roots, 140 mM NaCl, 1 hour, replicate 2 GSE7642 Time course expression analysis of the salt stress response in Arabidopsis roots
141.1 99.9 GSM184934 Arabidopsis, whole roots, 140 mM NaCl, 16 hour, replicate 2 GSE7642 Time course expression analysis of the salt stress response in Arabidopsis roots
120.8 99.9 GSM75513 Col-0 2h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.83 3e-178 624 At5g04950 830377 NAS1 (NICOTIANAMINE SYNTHASE 1) Encodes a nicotianamide synthase. C.G. S.X.
0.27 1e-10 67 At1g56430 842096 NAS4 (NICOTIANAMINE SYNTHASE 4) F:nicotianamine synthase activity;P:nicotianamine biosynthetic process;C:cellular_component unknown;PFABO C.G. S.X.
0.16 2e-6 54 At1g09240 837444 NAS3 (NICOTIANAMINE SYNTHASE 3) Encodes a nicotianamine synthase. C.G. S.X.
0.01 1e-1 38 At5g37920 833771 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;PB C.G. S.X.
0.01 1e-1 38 At5g02330 831755 DC1 domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMO C.G. S.X.
0.01 1e-1 38 At5g02350 831920 DC1 domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMO C.G. S.X.
0.01 1e-1 38 At3g17470 821012 RelA/SpoT domain-containing protein / calcium-binding EF-hand family protein F:GTP diphosphokinase activity, calcium ion binding;P:guanosine tetraphosphate metabolic process;C:chloroplast;BOMFPA C.G. S.X.
0.01 1e-1 38 At2g13900 815874 DC1 domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMO C.G. S.X.
0.01 5e-1 36 At3g47960 823951 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:plasma membrane, membrane;PMBFO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 7e-1 36 Glycine max Gma.11298.2.S1_at CD415329 - - 1e+0 At5g22580 - C.G. S.X.
0.02 9e-1 34 Hordeum vulgare Contig12935_at Contig12935 - - 6e-19 At5g06580 FAD linked oxidase family protein C.G. S.X.
0.02 9e-1 36 Oryza sativa OsAffx.13675.1.S1_at - - - 0 C.G. S.X.
0.09 4e-2 40 Populus trichocarpa PtpAffx.31911.1.S1_at CV230740 - - 1e-7 At1g09240 NAS3 (NICOTIANAMINE SYNTHASE 3) C.G. S.X.
0.03 5e-1 36 Triticum aestivum Ta.4210.3.S1_x_at CA720335 - - 6e-11 At1g30120 PDH-E1 BETA (PYRUVATE DEHYDROGENASE E1 BETA) C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1614260_at BQ798900 hypothetical protein LOC100244318 - 2e+0 At4g16780 ATHB-2 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2) C.G. S.X.
0.02 8e-1 34 Zea mays Zm.10199.1.A1_at BM339092 hypothetical protein LOC100193850 - 2e-5 At1g06890 transporter-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0010043 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a zinc ion stimulus.
X GO:0030418 The chemical reactions and pathways resulting in the formation of nicotianamine, 2(S),3'2(S),3''(S)-N-(N-(3-amino-3-carboxypropyl)-3-amino-3-carboxypropyl)-azetidine-2-carboxylic acid.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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