Gene omics information

Query gene ID At5g56080
Gene name NAS2 (NICOTIANAMINE SYNTHASE 2)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g56080835707NAS2 (NICOTIANAMINE SYNTHASE 2)Encodes a protein with nicotianamine synthase activity. Its transcript levels rise in roots in response to zinc deficiency and rise in leaves in response to elevated levels of zinc.S.X.H.G.
0.1811.4At3g08040819995FRD3 (FERRIC REDUCTASE DEFECTIVE 3)Encodes a member of the MATE (multidrug and toxin efflux family), expressed in roots but not shoots. Mutants accumulate excess iron, manganese and zinc, and express root Fe(III) chelatase activity even under iron sufficiency conditions. FRD3 is likely to function in root xylem loading of an iron chelator or other factor necessary for efficient iron uptake out of the xylem or apoplastic space and into leaf cells.S.X.H.G.
0.103.4At5g45070834538AtPP2-A8 (Phloem protein 2-A8)F:carbohydrate binding;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PS.X.H.G.
0.092.8At3g25190822112nodulin, putativeF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFAS.X.H.G.
0.092.8At1g74760---S.X.H.G.
0.061.4At5g04950830377NAS1 (NICOTIANAMINE SYNTHASE 1)Encodes a nicotianamide synthase.S.X.H.G.
0.061.4At5g493503771473unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBOPFVAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
452.2100.0GSM75520slr-1 2h NAA replicate 2GSE3350SLR/IAA14-dependent auxin induced lateral root initiation
360.6100.0GSM75516slr-1 0h NAA replicate 1GSE3350SLR/IAA14-dependent auxin induced lateral root initiation
323.8100.0GSM75517slr-1 2h NAA replicate 1GSE3350SLR/IAA14-dependent auxin induced lateral root initiation
323.2100.0GSM75519slr-1 0h NAA replicate 2GSE3350SLR/IAA14-dependent auxin induced lateral root initiation
305.7100.0GSM75518slr-1 6h NAA replicate 1GSE3350SLR/IAA14-dependent auxin induced lateral root initiation
186.8100.0GSM75521slr-1 6h NAA replicate 2GSE3350SLR/IAA14-dependent auxin induced lateral root initiation
181.4100.0GSM75511Col-0 6h MOCK replicate 1GSE3350SLR/IAA14-dependent auxin induced lateral root initiation
154.799.9GSM184930Arabidopsis, whole roots, 140 mM NaCl, 1 hour, replicate 2GSE7642Time course expression analysis of the salt stress response in Arabidopsis roots
141.199.9GSM184934Arabidopsis, whole roots, 140 mM NaCl, 16 hour, replicate 2GSE7642Time course expression analysis of the salt stress response in Arabidopsis roots
120.899.9GSM75513Col-0 2h NAA replicate 2GSE3350SLR/IAA14-dependent auxin induced lateral root initiation
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.833e-178624At5g04950830377NAS1 (NICOTIANAMINE SYNTHASE 1)Encodes a nicotianamide synthase.C.G.S.X.
0.271e-1067At1g56430842096NAS4 (NICOTIANAMINE SYNTHASE 4)F:nicotianamine synthase activity;P:nicotianamine biosynthetic process;C:cellular_component unknown;PFABOC.G.S.X.
0.162e-654At1g09240837444NAS3 (NICOTIANAMINE SYNTHASE 3)Encodes a nicotianamine synthase.C.G.S.X.
0.011e-138At5g37920833771unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PBC.G.S.X.
0.011e-138At5g02330831755DC1 domain-containing proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOC.G.S.X.
0.011e-138At5g02350831920DC1 domain-containing proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOC.G.S.X.
0.011e-138At3g17470821012RelA/SpoT domain-containing protein / calcium-binding EF-hand family proteinF:GTP diphosphokinase activity, calcium ion binding;P:guanosine tetraphosphate metabolic process;C:chloroplast;BOMFPAC.G.S.X.
0.011e-138At2g13900815874DC1 domain-containing proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOC.G.S.X.
0.015e-136At3g47960823951proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:plasma membrane, membrane;PMBFOC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.037e-136Glycine maxGma.11298.2.S1_atCD415329--1e+0At5g22580-C.G.S.X.
0.029e-134Hordeum vulgareContig12935_atContig12935--6e-19At5g06580FAD linked oxidase family proteinC.G.S.X.
0.029e-136Oryza sativaOsAffx.13675.1.S1_at---0C.G.S.X.
0.094e-240Populus trichocarpaPtpAffx.31911.1.S1_atCV230740--1e-7At1g09240NAS3 (NICOTIANAMINE SYNTHASE 3)C.G.S.X.
0.035e-136Triticum aestivumTa.4210.3.S1_x_atCA720335--6e-11At1g30120PDH-E1 BETA (PYRUVATE DEHYDROGENASE E1 BETA)C.G.S.X.
0.032e+032Vitis vinifera1614260_atBQ798900hypothetical protein LOC100244318-2e+0At4g16780ATHB-2 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2)C.G.S.X.
0.028e-134Zea maysZm.10199.1.A1_atBM339092hypothetical protein LOC100193850-2e-5At1g06890transporter-relatedC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0010043A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a zinc ion stimulus.
XGO:0030418The chemical reactions and pathways resulting in the formation of nicotianamine, 2(S),3'2(S),3''(S)-N-(N-(3-amino-3-carboxypropyl)-3-amino-3-carboxypropyl)-azetidine-2-carboxylic acid.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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